opensource/galaxy
3
0
Fork 0
mirror of https://github.com/galaxyproject/galaxy.git synced 2026-09-24 16:30:27 +08:00
Code Issues Packages Projects Releases Wiki Activity

Quick fix for Wiggle.set_meta(). No longer scans the entire file when using floating point data values or when contents are BED or variableStep.

Browse Source
This commit is contained in:
Daniel Blankenberg
2009-03-04 11:57:20 -05:00
parent 6090c78264
commit 6791ba92d7
1 changed files with 5 additions and 1 deletions
Download Patch File Download Diff File Expand all files Collapse all files
lib/galaxy/datatypes/interval.py
+5 -1
View File
@@ -715,12 +715,16 @@ class Wiggle( Tabular ):
if line and not line.startswith( '#' ):
elems = line.split( '\t' )
try:
int( elems[0] )
float( elems[0] ) #"Wiggle track data values can be integer or real, positive or negative values"
break
except:
do_break = False
for str in data.col1_startswith:
if elems[0].lower().startswith(str):
do_break = True
break
if do_break:
break
Tabular.set_meta( self, dataset, overwrite = overwrite, skip = i )
def sniff( self, filename ):