mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-21 13:50:20 +08:00
Undo dependency changes
This commit is contained in:
mvdbeek
@@ -1,209 +1,216 @@
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--extra-index-url https://wheels.galaxyproject.org/simple
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a2wsgi==1.7.0 ; python_version >= "3.7" and python_version < "3.12"
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adal==1.2.7 ; python_version >= "3.7" and python_version < "3.12"
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aiobotocore==2.4.2 ; python_version >= "3.7" and python_version < "3.12"
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aiofiles==23.2.1 ; python_version >= "3.7" and python_version < "3.12"
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aiohttp==3.8.5 ; python_version >= "3.7" and python_version < "3.12"
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aioitertools==0.11.0 ; python_version >= "3.7" and python_version < "3.12"
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aiosignal==1.3.1 ; python_version >= "3.7" and python_version < "3.12"
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alembic==1.11.2 ; python_version >= "3.7" and python_version < "3.12"
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amqp==5.1.1 ; python_version >= "3.7" and python_version < "3.12"
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||||
anyio==3.7.1 ; python_version >= "3.7" and python_version < "3.12"
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apispec==6.3.0 ; python_version >= "3.7" and python_version < "3.12"
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appdirs==1.4.4 ; python_version >= "3.7" and python_version < "3.12"
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arcp==0.2.1 ; python_version >= "3.7" and python_version < "3.12"
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argcomplete==3.1.1 ; python_version >= "3.7" and python_version < "3.12"
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async-timeout==4.0.3 ; python_version >= "3.7" and python_version < "3.12"
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asynctest==0.13.0 ; python_version >= "3.7" and python_version < "3.8"
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attmap==0.13.2 ; python_version >= "3.7" and python_version < "3.12"
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attrs==23.1.0 ; python_version >= "3.7" and python_version < "3.12"
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babel==2.12.1 ; python_version >= "3.7" and python_version < "3.12"
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backports-zoneinfo==0.2.1 ; python_version >= "3.7" and python_version < "3.9"
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bagit-profile==1.3.1 ; python_version >= "3.7" and python_version < "3.12"
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bagit==1.8.1 ; python_version >= "3.7" and python_version < "3.12"
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bcrypt==4.0.1 ; python_version >= "3.7" and python_version < "3.12"
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bdbag==1.7.1 ; python_version >= "3.7" and python_version < "3.12"
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beaker==1.12.1 ; python_version >= "3.7" and python_version < "3.12"
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billiard==3.6.4.0 ; python_version >= "3.7" and python_version < "3.12"
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bioblend==1.2.0 ; python_version >= "3.7" and python_version < "3.12"
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bleach==6.0.0 ; python_version >= "3.7" and python_version < "3.12"
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boltons==23.0.0 ; python_version >= "3.7" and python_version < "3.12"
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boto==2.49.0 ; python_version >= "3.7" and python_version < "3.12"
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botocore==1.27.59 ; python_version >= "3.7" and python_version < "3.12"
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bx-python==0.10.0 ; python_version >= "3.7" and python_version < "3.12"
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cachecontrol[filecache]==0.13.1 ; python_version >= "3.7" and python_version < "3.12"
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cached-property==1.5.2 ; python_version >= "3.7" and python_version < "3.8"
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celery==5.2.7 ; python_version >= "3.7" and python_version < "3.12"
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certifi==2023.7.22 ; python_version >= "3.7" and python_version < "3.12"
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cffi==1.15.1 ; python_version >= "3.7" and python_version < "3.12"
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charset-normalizer==3.2.0 ; python_version >= "3.7" and python_version < "3.12"
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cheetah3==3.2.6.post1 ; python_version >= "3.7" and python_version < "3.12"
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circus==0.18.0 ; python_version >= "3.7" and python_version < "3.12"
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click-didyoumean==0.3.0 ; python_version >= "3.7" and python_version < "3.12"
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click-plugins==1.1.1 ; python_version >= "3.7" and python_version < "3.12"
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click-repl==0.3.0 ; python_version >= "3.7" and python_version < "3.12"
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click==8.1.6 ; python_version >= "3.7" and python_version < "3.12"
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cloudauthz==0.6.0 ; python_version >= "3.7" and python_version < "3.12"
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cloudbridge==3.1.0 ; python_version >= "3.7" and python_version < "3.12"
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colorama==0.4.6 ; python_version >= "3.7" and python_version < "3.12" and platform_system == "Windows"
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coloredlogs==15.0.1 ; python_version >= "3.7" and python_version < "3.12"
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conda-package-streaming==0.9.0 ; python_version >= "3.7" and python_version < "3.12"
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cryptography==41.0.3 ; python_version >= "3.7" and python_version < "3.12"
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cwl-upgrader==1.2.8 ; python_version >= "3.7" and python_version < "3.12"
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cwl-utils==0.28 ; python_version >= "3.7" and python_version < "3.12"
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cwltool==3.1.20221109155812 ; python_version >= "3.7" and python_version < "3.12"
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cython==3.0.0 ; python_version >= "3.7" and python_version < "3.12"
|
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decorator==5.1.1 ; python_version >= "3.7" and python_version < "3.12"
|
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defusedxml==0.7.1 ; python_version >= "3.7" and python_version < "3.12"
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deprecation==2.1.0 ; python_version >= "3.7" and python_version < "3.12"
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dictobj==0.4 ; python_version >= "3.7" and python_version < "3.12"
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dnspython==2.3.0 ; python_version >= "3.7" and python_version < "3.12"
|
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docopt==0.6.2 ; python_version >= "3.7" and python_version < "3.12"
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docutils==0.18.1 ; python_version >= "3.7" and python_version < "3.12"
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ecdsa==0.18.0 ; python_version >= "3.7" and python_version < "3.12"
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edam-ontology==1.25.2 ; python_version >= "3.7" and python_version < "3.12"
|
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email-validator==2.0.0.post2 ; python_version >= "3.7" and python_version < "3.12"
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exceptiongroup==1.1.2 ; python_version >= "3.7" and python_version < "3.11"
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fastapi-utils @ git+https://github.com/mvdbeek/fastapi-utils@pydantic-2; python_version >= "3.7" and python_version < "3.12"
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fastapi==0.101.0 ; python_version >= "3.7" and python_version < "3.12"
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filelock==3.12.2 ; python_version >= "3.7" and python_version < "3.12"
|
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frozenlist==1.3.3 ; python_version >= "3.7" and python_version < "3.12"
|
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fs==2.4.16 ; python_version >= "3.7" and python_version < "3.12"
|
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fsspec==2023.1.0 ; python_version >= "3.7" and python_version < "3.12"
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future==0.18.3 ; python_version >= "3.7" and python_version < "3.12"
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galaxy-sequence-utils==1.1.5 ; python_version >= "3.7" and python_version < "3.12"
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galaxy2cwl==0.1.4 ; python_version >= "3.7" and python_version < "3.12"
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gravity==1.0.3 ; python_version >= "3.7" and python_version < "3.12"
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greenlet==2.0.2 ; python_version >= "3.7" and (platform_machine == "win32" or platform_machine == "WIN32" or platform_machine == "AMD64" or platform_machine == "amd64" or platform_machine == "x86_64" or platform_machine == "ppc64le" or platform_machine == "aarch64") and python_version < "3.12"
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gunicorn==21.2.0 ; python_version >= "3.7" and python_version < "3.12"
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gxformat2==0.18.0 ; python_version >= "3.7" and python_version < "3.12"
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h11==0.14.0 ; python_version >= "3.7" and python_version < "3.12"
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||||
h5grove==1.3.0 ; python_version >= "3.7" and python_version < "3.12"
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h5py==3.8.0 ; python_version >= "3.7" and python_version < "3.12"
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humanfriendly==10.0 ; python_version >= "3.7" and python_version < "3.12"
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idna==3.4 ; python_version >= "3.7" and python_version < "3.12"
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importlib-metadata==4.13.0 ; python_version >= "3.7" and python_version < "3.12"
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importlib-resources==5.12.0 ; python_version >= "3.7" and python_version < "3.12"
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isa-rwval==0.10.10 ; python_version >= "3.7" and python_version < "3.12"
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isodate==0.6.1 ; python_version >= "3.7" and python_version < "3.12"
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jinja2==3.1.2 ; python_version >= "3.7" and python_version < "3.12"
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jmespath==1.0.1 ; python_version >= "3.7" and python_version < "3.12"
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jsonref==1.1.0 ; python_version >= "3.7" and python_version < "3.12"
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jsonschema==4.17.3 ; python_version >= "3.7" and python_version < "3.12"
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kombu==5.2.4 ; python_version >= "3.7" and python_version < "3.12"
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lagom==2.4.1 ; python_version >= "3.7" and python_version < "3.12"
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lxml==4.9.3 ; python_version >= "3.7" and python_version < "3.12"
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mako==1.2.4 ; python_version >= "3.7" and python_version < "3.12"
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markdown-it-py==2.2.0 ; python_version >= "3.7" and python_version < "3.12"
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markdown==3.4.4 ; python_version >= "3.7" and python_version < "3.12"
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markupsafe==2.1.3 ; python_version >= "3.7" and python_version < "3.12"
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mdurl==0.1.2 ; python_version >= "3.7" and python_version < "3.12"
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mercurial==6.5.1 ; python_version >= "3.7" and python_version < "3.12"
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mistune==2.0.5 ; python_version >= "3.7" and python_version < "3.12"
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mrcfile==1.4.3 ; python_version >= "3.7" and python_version < "3.12"
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msal==1.23.0 ; python_version >= "3.7" and python_version < "3.12"
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msgpack==1.0.5 ; python_version >= "3.7" and python_version < "3.12"
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multidict==6.0.4 ; python_version >= "3.7" and python_version < "3.12"
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mypy-extensions==1.0.0 ; python_version >= "3.7" and python_version < "3.12"
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networkx==2.5 ; python_version >= "3.7" and python_version < "3.12"
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nodeenv==1.8.0 ; python_version >= "3.7" and python_version < "3.12"
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numpy==1.21.6 ; python_version >= "3.7" and python_version < "3.8"
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a2wsgi==1.9.0 ; python_version >= "3.8" and python_version < "3.12"
|
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adal==1.2.7 ; python_version >= "3.8" and python_version < "3.12"
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aiobotocore==2.9.0 ; python_version >= "3.8" and python_version < "3.12"
|
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aiodataloader==0.4.0 ; python_version >= "3.8" and python_version < "3.12"
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||||
aiofiles==23.2.1 ; python_version >= "3.8" and python_version < "3.12"
|
||||
aiohttp==3.9.1 ; python_version >= "3.8" and python_version < "3.12"
|
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aioitertools==0.11.0 ; python_version >= "3.8" and python_version < "3.12"
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aiosignal==1.3.1 ; python_version >= "3.8" and python_version < "3.12"
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alembic==1.13.1 ; python_version >= "3.8" and python_version < "3.12"
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||||
amqp==5.2.0 ; python_version >= "3.8" and python_version < "3.12"
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||||
aniso8601==9.0.1 ; python_version >= "3.8" and python_version < "3.12"
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anyio==4.2.0 ; python_version >= "3.8" and python_version < "3.12"
|
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apispec==6.3.1 ; python_version >= "3.8" and python_version < "3.12"
|
||||
appdirs==1.4.4 ; python_version >= "3.8" and python_version < "3.12"
|
||||
arcp==0.2.1 ; python_version >= "3.8" and python_version < "3.12"
|
||||
argcomplete==3.2.1 ; python_version >= "3.8" and python_version < "3.12"
|
||||
async-timeout==4.0.3 ; python_version >= "3.8" and python_version < "3.11"
|
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attmap==0.13.2 ; python_version >= "3.8" and python_version < "3.12"
|
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attrs==23.1.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
babel==2.14.0 ; python_version >= "3.8" and python_version < "3.12"
|
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backports-zoneinfo==0.2.1 ; python_version >= "3.8" and python_version < "3.9"
|
||||
backports-zoneinfo[tzdata]==0.2.1 ; python_version >= "3.8" and python_version < "3.9"
|
||||
bagit-profile==1.3.1 ; python_version >= "3.8" and python_version < "3.12"
|
||||
bagit==1.8.1 ; python_version >= "3.8" and python_version < "3.12"
|
||||
bcrypt==4.1.2 ; python_version >= "3.8" and python_version < "3.12"
|
||||
bdbag==1.7.1 ; python_version >= "3.8" and python_version < "3.12"
|
||||
beaker==1.12.1 ; python_version >= "3.8" and python_version < "3.12"
|
||||
billiard==4.2.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
bioblend==1.2.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
bleach==6.1.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
boltons==23.1.1 ; python_version >= "3.8" and python_version < "3.12"
|
||||
boto==2.49.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
botocore==1.33.13 ; python_version >= "3.8" and python_version < "3.12"
|
||||
bx-python==0.10.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
cachecontrol[filecache]==0.13.1 ; python_version >= "3.8" and python_version < "3.12"
|
||||
celery==5.3.6 ; python_version >= "3.8" and python_version < "3.12"
|
||||
certifi==2023.11.17 ; python_version >= "3.8" and python_version < "3.12"
|
||||
cffi==1.16.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
charset-normalizer==3.3.2 ; python_version >= "3.8" and python_version < "3.12"
|
||||
cheetah3==3.2.6.post1 ; python_version >= "3.8" and python_version < "3.12"
|
||||
circus==0.18.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
click-didyoumean==0.3.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
click-plugins==1.1.1 ; python_version >= "3.8" and python_version < "3.12"
|
||||
click-repl==0.3.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
click==8.1.7 ; python_version >= "3.8" and python_version < "3.12"
|
||||
cloudauthz==0.6.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
cloudbridge==3.2.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
colorama==0.4.6 ; python_version >= "3.8" and python_version < "3.12" and platform_system == "Windows"
|
||||
coloredlogs==15.0.1 ; python_version >= "3.8" and python_version < "3.12"
|
||||
conda-package-streaming==0.9.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
cryptography==41.0.7 ; python_version >= "3.8" and python_version < "3.12"
|
||||
cwl-upgrader==1.2.11 ; python_version >= "3.8" and python_version < "3.12"
|
||||
cwl-utils==0.32 ; python_version >= "3.8" and python_version < "3.12"
|
||||
cwltool==3.1.20231207110929 ; python_version >= "3.8" and python_version < "3.12"
|
||||
decorator==5.1.1 ; python_version >= "3.8" and python_version < "3.12"
|
||||
defusedxml==0.7.1 ; python_version >= "3.8" and python_version < "3.12"
|
||||
deprecation==2.1.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
dictobj==0.4 ; python_version >= "3.8" and python_version < "3.12"
|
||||
dnspython==2.4.2 ; python_version >= "3.8" and python_version < "3.12"
|
||||
docopt==0.6.2 ; python_version >= "3.8" and python_version < "3.12"
|
||||
docutils==0.18.1 ; python_version >= "3.8" and python_version < "3.12"
|
||||
dparse==0.6.3 ; python_version >= "3.8" and python_version < "3.12"
|
||||
ecdsa==0.18.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
edam-ontology==1.25.2 ; python_version >= "3.8" and python_version < "3.12"
|
||||
email-validator==2.1.0.post1 ; python_version >= "3.8" and python_version < "3.12"
|
||||
exceptiongroup==1.2.0 ; python_version >= "3.8" and python_version < "3.11"
|
||||
fastapi==0.98.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
filelock==3.13.1 ; python_version >= "3.8" and python_version < "3.12"
|
||||
frozenlist==1.4.1 ; python_version >= "3.8" and python_version < "3.12"
|
||||
fs==2.4.16 ; python_version >= "3.8" and python_version < "3.12"
|
||||
fsspec==2023.12.2 ; python_version >= "3.8" and python_version < "3.12"
|
||||
future==0.18.3 ; python_version >= "3.8" and python_version < "3.12"
|
||||
galaxy-sequence-utils==1.1.5 ; python_version >= "3.8" and python_version < "3.12"
|
||||
galaxy2cwl==0.1.4 ; python_version >= "3.8" and python_version < "3.12"
|
||||
graphene-sqlalchemy==3.0.0rc1 ; python_version >= "3.8" and python_version < "3.12"
|
||||
graphene==3.3 ; python_version >= "3.8" and python_version < "3.12"
|
||||
graphql-core==3.2.3 ; python_version >= "3.8" and python_version < "3.12"
|
||||
graphql-relay==3.2.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
gravity==1.0.4 ; python_version >= "3.8" and python_version < "3.12"
|
||||
greenlet==3.0.1 ; python_version >= "3.8" and (platform_machine == "aarch64" or platform_machine == "ppc64le" or platform_machine == "x86_64" or platform_machine == "amd64" or platform_machine == "AMD64" or platform_machine == "win32" or platform_machine == "WIN32") and python_version < "3.12"
|
||||
gunicorn==21.2.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
gxformat2==0.18.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
h11==0.14.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
h5grove==1.3.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
h5py==3.10.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
humanfriendly==10.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
idna==3.6 ; python_version >= "3.8" and python_version < "3.12"
|
||||
importlib-metadata==7.0.1 ; python_version >= "3.8" and python_version < "3.12"
|
||||
importlib-resources==6.1.1 ; python_version >= "3.8" and python_version < "3.9"
|
||||
isa-rwval==0.10.10 ; python_version >= "3.8" and python_version < "3.12"
|
||||
isodate==0.6.1 ; python_version >= "3.8" and python_version < "3.12"
|
||||
jinja2==3.1.2 ; python_version >= "3.8" and python_version < "3.12"
|
||||
jmespath==1.0.1 ; python_version >= "3.8" and python_version < "3.12"
|
||||
jsonref==1.1.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
jsonschema-specifications==2023.11.2 ; python_version >= "3.8" and python_version < "3.12"
|
||||
jsonschema==4.20.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
kombu==5.3.4 ; python_version >= "3.8" and python_version < "3.12"
|
||||
lagom==2.6.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
lxml==4.9.4 ; python_version >= "3.8" and python_version < "3.12"
|
||||
mako==1.3.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
markdown-it-py==3.0.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
markdown==3.5.1 ; python_version >= "3.8" and python_version < "3.12"
|
||||
markupsafe==2.1.3 ; python_version >= "3.8" and python_version < "3.12"
|
||||
mdurl==0.1.2 ; python_version >= "3.8" and python_version < "3.12"
|
||||
mercurial==6.6.1 ; python_version >= "3.8" and python_version < "3.12"
|
||||
mistune==2.0.5 ; python_version >= "3.8" and python_version < "3.12"
|
||||
mrcfile==1.4.3 ; python_version >= "3.8" and python_version < "3.12"
|
||||
msal==1.26.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
msgpack==1.0.7 ; python_version >= "3.8" and python_version < "3.12"
|
||||
multidict==6.0.4 ; python_version >= "3.8" and python_version < "3.12"
|
||||
mypy-extensions==1.0.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
networkx==2.5 ; python_version >= "3.8" and python_version < "3.12"
|
||||
nodeenv==1.8.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
numpy==1.24.4 ; python_version >= "3.8" and python_version < "3.9"
|
||||
numpy==1.25.2 ; python_version >= "3.9" and python_version < "3.12"
|
||||
oauthlib==3.2.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
orjson==3.9.4 ; python_version >= "3.7" and python_version < "3.12"
|
||||
oyaml==1.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
packaging==23.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
paramiko==3.3.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
parsley==1.3 ; python_version >= "3.7" and python_version < "3.12"
|
||||
paste==3.5.3 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pastedeploy==3.0.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pebble==5.0.3 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pkgutil-resolve-name==1.3.10 ; python_version >= "3.7" and python_version < "3.9"
|
||||
prompt-toolkit==3.0.39 ; python_version >= "3.7" and python_version < "3.12"
|
||||
prov==1.5.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
psutil==5.9.5 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pulsar-galaxy-lib==0.15.3 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pyasn1==0.5.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pycparser==2.21 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pycryptodome==3.18.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pydantic-tes==0.1.5 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pydantic==2.1.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pydantic_core==2.4.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pydot==1.4.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pyeventsystem==0.1.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pyfaidx==0.7.2.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pygments==2.16.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pyjwt==2.8.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pyjwt[crypto]==2.8.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pykwalify==1.8.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pylibmagic==0.4.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pynacl==1.5.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pyparsing==3.0.9 ; python_version >= "3.7" and python_version < "3.12"
|
||||
numpy==1.26.2 ; python_version >= "3.9" and python_version < "3.12"
|
||||
oauthlib==3.2.2 ; python_version >= "3.8" and python_version < "3.12"
|
||||
orjson==3.9.10 ; python_version >= "3.8" and python_version < "3.12"
|
||||
oyaml==1.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
packaging==23.2 ; python_version >= "3.8" and python_version < "3.12"
|
||||
paramiko==3.4.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
parsley==1.3 ; python_version >= "3.8" and python_version < "3.12"
|
||||
paste==3.7.1 ; python_version >= "3.8" and python_version < "3.12"
|
||||
pastedeploy==3.1.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
pebble==5.0.5 ; python_version >= "3.8" and python_version < "3.12"
|
||||
pkgutil-resolve-name==1.3.10 ; python_version >= "3.8" and python_version < "3.9"
|
||||
promise==2.3 ; python_version >= "3.8" and python_version < "3.12"
|
||||
prompt-toolkit==3.0.43 ; python_version >= "3.8" and python_version < "3.12"
|
||||
prov==1.5.1 ; python_version >= "3.8" and python_version < "3.12"
|
||||
psutil==5.9.7 ; python_version >= "3.8" and python_version < "3.12"
|
||||
pulsar-galaxy-lib==0.15.5 ; python_version >= "3.8" and python_version < "3.12"
|
||||
pyasn1==0.5.1 ; python_version >= "3.8" and python_version < "3.12"
|
||||
pycparser==2.21 ; python_version >= "3.8" and python_version < "3.12"
|
||||
pycryptodome==3.19.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
pydantic-tes==0.1.5 ; python_version >= "3.8" and python_version < "3.12"
|
||||
pydantic==1.10.13 ; python_version >= "3.8" and python_version < "3.12"
|
||||
pydantic[email]==1.10.13 ; python_version >= "3.8" and python_version < "3.12"
|
||||
pydot==1.4.2 ; python_version >= "3.8" and python_version < "3.12"
|
||||
pyeventsystem==0.1.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
pyfaidx==0.7.2.2 ; python_version >= "3.8" and python_version < "3.12"
|
||||
pygments==2.17.2 ; python_version >= "3.8" and python_version < "3.12"
|
||||
pyjwt==2.8.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
pyjwt[crypto]==2.8.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
pykwalify==1.8.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
pylibmagic==0.5.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
pynacl==1.5.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
pyparsing==3.1.1 ; python_version >= "3.8" and python_version < "3.12"
|
||||
pyreadline3==3.4.1 ; sys_platform == "win32" and python_version >= "3.8" and python_version < "3.12"
|
||||
pyreadline==2.1 ; sys_platform == "win32" and python_version < "3.8" and python_version >= "3.7"
|
||||
pyrsistent==0.19.3 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pysam==0.21.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
python-dateutil==2.8.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
python-jose==3.3.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
python-magic==0.4.27 ; python_version >= "3.7" and python_version < "3.12"
|
||||
python-multipart==0.0.6 ; python_version >= "3.7" and python_version < "3.12"
|
||||
python3-openid==3.2.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pytz==2023.3 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pyyaml==6.0.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pyzmq==25.1.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
rdflib==6.2.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
refgenconf==0.12.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
repoze-lru==0.7 ; python_version >= "3.7" and python_version < "3.12"
|
||||
requests-oauthlib==1.3.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
requests-toolbelt==1.0.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
requests-unixsocket==0.3.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
requests==2.31.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
rich==13.5.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
rocrate==0.8.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
routes==2.5.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
rsa==4.9 ; python_version >= "3.7" and python_version < "3.12"
|
||||
ruamel-yaml-clib==0.2.7 ; platform_python_implementation == "CPython" and python_version < "3.11" and python_version >= "3.7"
|
||||
ruamel-yaml==0.17.21 ; python_version >= "3.7" and python_version < "3.12"
|
||||
s3fs==2023.1.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
schema-salad==8.4.20230808163024 ; python_version >= "3.7" and python_version < "3.12"
|
||||
setuptools-scm==5.0.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
setuptools==68.0.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
shellescape==3.8.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
six==1.16.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
sniffio==1.3.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
social-auth-core[openidconnect]==4.0.3 ; python_version >= "3.7" and python_version < "3.12"
|
||||
sortedcontainers==2.4.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
sqlalchemy==1.4.49 ; python_version >= "3.7" and python_version < "3.12"
|
||||
sqlitedict==2.1.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
sqlparse==0.4.4 ; python_version >= "3.7" and python_version < "3.12"
|
||||
starlette-context==0.3.5 ; python_version >= "3.7" and python_version < "3.12"
|
||||
starlette==0.27.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
supervisor==4.2.5 ; python_version >= "3.7" and python_version < "3.12"
|
||||
svgwrite==1.4.3 ; python_version >= "3.7" and python_version < "3.12"
|
||||
tenacity==8.2.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
tifffile==2021.11.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
tinydb==4.8.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
tornado==6.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
tqdm==4.66.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
tuspy==1.0.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
tuswsgi==0.5.5 ; python_version >= "3.7" and python_version < "3.12"
|
||||
typing-extensions==4.7.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
tzdata==2023.3 ; python_version >= "3.7" and python_version < "3.12" and platform_system == "Windows"
|
||||
tzlocal==5.0.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
ubiquerg==0.6.3 ; python_version >= "3.7" and python_version < "3.12"
|
||||
urllib3==1.26.16 ; python_version >= "3.7" and python_version < "3.12"
|
||||
uvicorn==0.22.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
uvloop==0.17.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
vine==5.0.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
wcwidth==0.2.6 ; python_version >= "3.7" and python_version < "3.12"
|
||||
webencodings==0.5.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
webob==1.8.7 ; python_version >= "3.7" and python_version < "3.12"
|
||||
whoosh==2.7.4 ; python_version >= "3.7" and python_version < "3.12"
|
||||
wrapt==1.15.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
yacman==0.9.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
yarl==1.9.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
zipp==3.15.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
zipstream-new==1.1.8 ; python_version >= "3.7" and python_version < "3.12"
|
||||
zstandard==0.21.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pysam==0.22.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
python-dateutil==2.8.2 ; python_version >= "3.8" and python_version < "3.12"
|
||||
python-jose==3.3.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
python-magic==0.4.27 ; python_version >= "3.8" and python_version < "3.12"
|
||||
python-multipart==0.0.6 ; python_version >= "3.8" and python_version < "3.12"
|
||||
python3-openid==3.2.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
pytz==2023.3.post1 ; python_version >= "3.8" and python_version < "3.12"
|
||||
pyyaml==6.0.1 ; python_version >= "3.8" and python_version < "3.12"
|
||||
pyzmq==25.1.2 ; python_version >= "3.8" and python_version < "3.12"
|
||||
rdflib==6.3.2 ; python_version >= "3.8" and python_version < "3.12"
|
||||
referencing==0.32.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
refgenconf==0.12.2 ; python_version >= "3.8" and python_version < "3.12"
|
||||
regex==2023.10.3 ; python_version >= "3.8" and python_version < "3.12"
|
||||
repoze-lru==0.7 ; python_version >= "3.8" and python_version < "3.12"
|
||||
requests-oauthlib==1.3.1 ; python_version >= "3.8" and python_version < "3.12"
|
||||
requests-toolbelt==1.0.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
requests-unixsocket==0.3.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
requests==2.31.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
rich==13.7.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
rocrate==0.9.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
routes==2.5.1 ; python_version >= "3.8" and python_version < "3.12"
|
||||
rpds-py==0.15.2 ; python_version >= "3.8" and python_version < "3.12"
|
||||
rsa==4.9 ; python_version >= "3.8" and python_version < "3.12"
|
||||
ruamel-yaml-clib==0.2.8 ; platform_python_implementation == "CPython" and python_version < "3.12" and python_version >= "3.8"
|
||||
ruamel-yaml==0.18.5 ; python_version >= "3.8" and python_version < "3.12"
|
||||
s3fs==2023.12.2 ; python_version >= "3.8" and python_version < "3.12"
|
||||
schema-salad==8.5.20231201181309 ; python_version >= "3.8" and python_version < "3.12"
|
||||
setuptools-scm==5.0.2 ; python_version >= "3.8" and python_version < "3.12"
|
||||
setuptools==69.0.2 ; python_version >= "3.8" and python_version < "3.12"
|
||||
shellescape==3.8.1 ; python_version >= "3.8" and python_version < "3.12"
|
||||
six==1.16.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
sniffio==1.3.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
social-auth-core[openidconnect]==4.0.3 ; python_version >= "3.8" and python_version < "3.12"
|
||||
sortedcontainers==2.4.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
spython==0.3.13 ; python_version >= "3.8" and python_version < "3.12"
|
||||
sqlalchemy==1.4.50 ; python_version >= "3.8" and python_version < "3.12"
|
||||
sqlitedict==2.1.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
sqlparse==0.4.4 ; python_version >= "3.8" and python_version < "3.12"
|
||||
starlette-context==0.3.6 ; python_version >= "3.8" and python_version < "3.12"
|
||||
starlette-graphene3==0.6.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
starlette==0.27.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
supervisor==4.2.5 ; python_version >= "3.8" and python_version < "3.12"
|
||||
svgwrite==1.4.3 ; python_version >= "3.8" and python_version < "3.12"
|
||||
tenacity==8.2.3 ; python_version >= "3.8" and python_version < "3.12"
|
||||
tifffile==2023.7.10 ; python_version >= "3.8" and python_version < "3.12"
|
||||
tinydb==4.8.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
tomli==2.0.1 ; python_version >= "3.8" and python_version < "3.11"
|
||||
tornado==6.4 ; python_version >= "3.8" and python_version < "3.12"
|
||||
tqdm==4.66.1 ; python_version >= "3.8" and python_version < "3.12"
|
||||
tuspy==1.0.3 ; python_version >= "3.8" and python_version < "3.12"
|
||||
tuswsgi==0.5.5 ; python_version >= "3.8" and python_version < "3.12"
|
||||
typing-extensions==4.9.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
tzdata==2023.3 ; python_version >= "3.8" and python_version < "3.12"
|
||||
tzlocal==5.2 ; python_version >= "3.8" and python_version < "3.12"
|
||||
ubiquerg==0.6.3 ; python_version >= "3.8" and python_version < "3.12"
|
||||
urllib3==1.26.18 ; python_version >= "3.8" and python_version < "3.12"
|
||||
uvicorn==0.25.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
uvloop==0.19.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
vine==5.1.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
wcwidth==0.2.12 ; python_version >= "3.8" and python_version < "3.12"
|
||||
webencodings==0.5.1 ; python_version >= "3.8" and python_version < "3.12"
|
||||
webob==1.8.7 ; python_version >= "3.8" and python_version < "3.12"
|
||||
whoosh==2.7.4 ; python_version >= "3.8" and python_version < "3.12"
|
||||
wrapt==1.16.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
yacman==0.9.2 ; python_version >= "3.8" and python_version < "3.12"
|
||||
yarl==1.9.4 ; python_version >= "3.8" and python_version < "3.12"
|
||||
zipp==3.17.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
zipstream-new==1.1.8 ; python_version >= "3.8" and python_version < "3.12"
|
||||
zstandard==0.22.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
|
||||
@@ -1,22 +1,21 @@
|
||||
cffi==1.15.1
|
||||
cryptography==41.0.3
|
||||
mypy==1.4.1
|
||||
mypy-extensions==1.0.0
|
||||
pycparser==2.21
|
||||
pydantic==2.1.1
|
||||
tomli==2.0.1
|
||||
typed-ast==1.5.5
|
||||
types-bleach==6.0.0.4
|
||||
types-boto==2.49.18.9
|
||||
types-contextvars==2.4.7.3
|
||||
types-dataclasses==0.6.6
|
||||
types-docutils==0.20.0.1
|
||||
types-Markdown==3.4.2.10
|
||||
types-paramiko==3.3.0.0
|
||||
types-pkg-resources==0.1.3
|
||||
types-python-dateutil==2.8.19.14
|
||||
types-PyYAML==6.0.12.11
|
||||
types-requests==2.31.0.2
|
||||
types-six==1.16.21.9
|
||||
types-urllib3==1.26.25.14
|
||||
typing_extensions==4.7.1
|
||||
cffi==1.16.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
cryptography==41.0.7 ; python_version >= "3.8" and python_version < "3.12"
|
||||
mypy-extensions==1.0.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
mypy==1.8.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
pycparser==2.21 ; python_version >= "3.8" and python_version < "3.12"
|
||||
pydantic==1.10.13 ; python_version >= "3.8" and python_version < "3.12"
|
||||
tomli==2.0.1 ; python_version >= "3.8" and python_version < "3.11"
|
||||
types-bleach==6.1.0.1 ; python_version >= "3.8" and python_version < "3.12"
|
||||
types-boto==2.49.18.9 ; python_version >= "3.8" and python_version < "3.12"
|
||||
types-contextvars==2.4.7.3 ; python_version >= "3.8" and python_version < "3.12"
|
||||
types-dataclasses==0.6.6 ; python_version >= "3.8" and python_version < "3.12"
|
||||
types-docutils==0.20.0.3 ; python_version >= "3.8" and python_version < "3.12"
|
||||
types-markdown==3.5.0.3 ; python_version >= "3.8" and python_version < "3.12"
|
||||
types-paramiko==3.3.0.2 ; python_version >= "3.8" and python_version < "3.12"
|
||||
types-pkg-resources==0.1.3 ; python_version >= "3.8" and python_version < "3.12"
|
||||
types-python-dateutil==2.8.19.14 ; python_version >= "3.8" and python_version < "3.12"
|
||||
types-pyyaml==6.0.12.12 ; python_version >= "3.8" and python_version < "3.12"
|
||||
types-requests==2.31.0.6 ; python_version >= "3.8" and python_version < "3.12"
|
||||
types-six==1.16.21.9 ; python_version >= "3.8" and python_version < "3.12"
|
||||
types-urllib3==1.26.25.14 ; python_version >= "3.8" and python_version < "3.12"
|
||||
typing-extensions==4.9.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
|
||||
+49
-17
@@ -1,10 +1,11 @@
|
||||
[tool.black]
|
||||
line-length = 120
|
||||
target-version = ['py37']
|
||||
target-version = ['py38']
|
||||
include = '\.pyi?$'
|
||||
extend-exclude = '''
|
||||
^/(
|
||||
| packages
|
||||
| lib/tool_shed/test/test_data/repos
|
||||
)/
|
||||
'''
|
||||
|
||||
@@ -22,9 +23,14 @@ homepage = "https://galaxyproject.org/"
|
||||
repository = "https://github.com/galaxyproject/galaxy/"
|
||||
documentation = "https://docs.galaxyproject.org/"
|
||||
|
||||
[[tool.poetry.source]]
|
||||
name = "PyPI"
|
||||
priority = "default"
|
||||
|
||||
[[tool.poetry.source]]
|
||||
name = "galaxyproject"
|
||||
url = "https://wheels.galaxyproject.org/simple"
|
||||
priority = "primary"
|
||||
|
||||
[tool.poetry.dependencies]
|
||||
a2wsgi = "*"
|
||||
@@ -44,26 +50,26 @@ Cheetah3 = "!=3.2.6.post2" # yanked release, https://github.com/python-poetry/p
|
||||
cloudauthz = "==0.6.0"
|
||||
cloudbridge = "*"
|
||||
circus = "*"
|
||||
cwltool = "==3.1.20221109155812"
|
||||
cwltool = ">=3.1.20230624081518" # save time, minimum needed by cwl-1.0 branch
|
||||
conda-package-streaming = "*"
|
||||
dictobj = "*"
|
||||
dnspython = "*"
|
||||
docutils = "!=0.17, !=0.17.1"
|
||||
dparse = "*"
|
||||
edam-ontology = "*"
|
||||
fastapi = ">0.101.0"
|
||||
fastapi-utils = "*"
|
||||
fastapi = ">=0.71.0, !=0.89.0, <0.99" # https://github.com/tiangolo/fastapi/issues/4041 https://github.com/tiangolo/fastapi/issues/5861
|
||||
fs = "*"
|
||||
future = "*"
|
||||
galaxy_sequence_utils = "*"
|
||||
gravity = ">=1.0"
|
||||
graphene-sqlalchemy = "3.0.0rc1" # need a beta release to be compat. with starlette plugin
|
||||
gravity = ">=1.0.4"
|
||||
gunicorn = "*"
|
||||
gxformat2 = "*"
|
||||
h5grove = ">=1.2.1"
|
||||
h5py = "*"
|
||||
importlib-metadata = "<5" # Work around https://github.com/celery/kombu/issues/1600
|
||||
importlib-resources = "*"
|
||||
isa-rwval = "*"
|
||||
kombu = "*"
|
||||
importlib-resources = { version = "*", python = "<3.9" } # for importlib.{abc.Traversable,resources.{files, Package}}
|
||||
isa-rwval = ">=0.10.10"
|
||||
kombu = ">=5.3" # for importlib-metadata fix
|
||||
lagom = "*"
|
||||
Mako = "*"
|
||||
Markdown = "*"
|
||||
@@ -81,18 +87,19 @@ pebble = "*"
|
||||
psutil = "*"
|
||||
pulsar-galaxy-lib = ">=0.15.0.dev0"
|
||||
pycryptodome = "*"
|
||||
pydantic = {version = ">=2", extras = ["email"]}
|
||||
pydantic = {version = "<2", extras = ["email"]}
|
||||
PyJWT = "*"
|
||||
pykwalify = "*"
|
||||
pylibmagic = "*"
|
||||
pyparsing = "<3.1" # Needed by matplotlib on Python >=3.8 https://github.com/matplotlib/matplotlib/issues/26152
|
||||
pyparsing = "*"
|
||||
pysam = ">=0.21" # for Python 3.11 support on macOS
|
||||
python = ">=3.7,<3.12" # Keep maximum version strict to appease numpy and scipy
|
||||
python = ">=3.8,<3.12" # Keep maximum version strict to appease numpy and scipy
|
||||
python-dateutil = "*"
|
||||
python-magic = "*"
|
||||
python-multipart = "*" # required to support form parsing in FastAPI/Starlette
|
||||
PyYAML = "*"
|
||||
refgenconf = ">=0.12.0"
|
||||
regex = "*"
|
||||
requests = "*"
|
||||
rocrate = "*"
|
||||
Routes = "*"
|
||||
@@ -104,6 +111,7 @@ sqlitedict = "*"
|
||||
sqlparse = "*"
|
||||
starlette = "*"
|
||||
starlette-context = "*"
|
||||
starlette-graphene3 = "*"
|
||||
svgwrite = "*"
|
||||
tifffile = "*"
|
||||
tuswsgi = "*"
|
||||
@@ -130,6 +138,7 @@ lxml = "!=4.2.2"
|
||||
markdown-it-reporter = "*"
|
||||
myst-parser = "*"
|
||||
pkce = "*"
|
||||
playwright = "*"
|
||||
pytest = "*"
|
||||
pytest-asyncio = "*"
|
||||
pytest-celery = "*"
|
||||
@@ -139,28 +148,49 @@ pytest-httpserver = "*"
|
||||
python-irodsclient = "!=1.1.2" # https://github.com/irods/python-irodsclient/issues/356
|
||||
pytest-json-report = "*"
|
||||
pytest-mock = "*"
|
||||
pytest-playwright = "*"
|
||||
pytest-postgresql = "!=3.0.0" # https://github.com/ClearcodeHQ/pytest-postgresql/issues/426
|
||||
pytest-shard = "*"
|
||||
responses = "*"
|
||||
selenium = "*"
|
||||
urllib3 = "<2" # Necessary for poetry for resolve deps for Python 3.8+
|
||||
seletools = "*"
|
||||
Sphinx = ">=4.0" # support docutils 0.17
|
||||
sphinx_rtd_theme = ">=1.0.0"
|
||||
sphinx-rtd-theme = ">=1.0.0,<2" # https://github.com/python-poetry/poetry/issues/8194
|
||||
statsd = "*"
|
||||
testfixtures = "*"
|
||||
tuspy = "*"
|
||||
twill = "*"
|
||||
twill = ">=3.2.1" # https://github.com/twill-tools/twill/issues/18
|
||||
watchdog = "*"
|
||||
|
||||
[tool.poetry.group.typecheck.dependencies]
|
||||
mypy = "*"
|
||||
pydantic = "<2" # for pydantic.mypy plugin
|
||||
types-bleach = "*"
|
||||
types-boto = "*"
|
||||
types-contextvars = "*"
|
||||
types-dataclasses = "*"
|
||||
types-docutils = "*"
|
||||
types-Markdown = "*"
|
||||
types-paramiko = "*"
|
||||
types-pkg-resources = "*"
|
||||
types-python-dateutil = "*"
|
||||
types-PyYAML = "*"
|
||||
types-requests = "*"
|
||||
types-six = "*"
|
||||
|
||||
[tool.ruff]
|
||||
select = ["E", "F", "B", "UP"]
|
||||
target-version = "py37"
|
||||
# Enable: pycodestyle errors (E), Pyflakes (F), flake8-bugbear (B),
|
||||
# flake8-logging-format (G) and pyupgrade (UP)
|
||||
select = ["E", "F", "B", "G", "UP"]
|
||||
target-version = "py38"
|
||||
# Exceptions:
|
||||
# B008 Do not perform function calls in argument defaults (for FastAPI Depends and Body)
|
||||
# B9 flake8-bugbear opinionated warnings
|
||||
# E402 module level import not at top of file # TODO, we would like to improve this.
|
||||
# E501 is line length (delegated to black)
|
||||
ignore = ["B008", "B9", "E402", "E501"]
|
||||
# G* are TODOs
|
||||
ignore = ["B008", "B9", "E402", "E501", "G001", "G002", "G004"]
|
||||
exclude = [
|
||||
"lib/tool_shed/test/test_data/repos"
|
||||
]
|
||||
@@ -178,3 +208,5 @@ relative-imports-order = "closest-to-furthest"
|
||||
# Don't check some pyupgrade rules on generated files
|
||||
"lib/galaxy/schema/bco/*" = ["UP006", "UP007"]
|
||||
"lib/galaxy/schema/drs/*" = ["UP006", "UP007"]
|
||||
"lib/tool_shed_client/schema/trs.py" = ["UP006", "UP007"]
|
||||
"lib/tool_shed_client/schema/trs_service_info.py" = ["UP006", "UP007"]
|
||||
|
||||
Reference in New Issue
Block a user