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Use profile="18.01" for BamNative converters

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This is because samtools writes to stderr when sorting/merging large files.
Part of https://github.com/galaxyproject/galaxy/issues/5496#issuecomment-365458089.
This commit is contained in:
mvdbeek
2018-02-14 14:10:18 +01:00
parent adaacbc665
commit 5ff6be93ed
2 changed files with 2 additions and 2 deletions
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lib/galaxy/datatypes/converters/bam_native_to_bam_converter.xml
+1 -1
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@@ -1,4 +1,4 @@
<tool id="CONVERTER_bam_native_to_bam" name="Convert BAM native to BAM" version="1.0.0" hidden="true">
<tool id="CONVERTER_bam_native_to_bam" name="Convert BAM native to BAM" version="1.0.0" hidden="true" profile="18.01">
<!-- <description>__NOT_USED_CURRENTLY_FOR_CONVERTERS__</description> -->
<requirements>
<requirement type="package" version="1.6">samtools</requirement>
lib/galaxy/datatypes/converters/sam_to_bam_native.xml
+1 -1
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@@ -1,4 +1,4 @@
<tool id="CONVERTER_sam_to_bam_native" name="Convert SAM to BAM native - without sorting" version="1.0.0">
<tool id="CONVERTER_sam_to_bam_native" name="Convert SAM to BAM native - without sorting" version="1.0.0" profile="18.01">
<!-- <description>__NOT_USED_CURRENTLY_FOR_CONVERTERS__</description> -->
<requirements>
<requirement type="package" version="1.6">samtools</requirement>