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change the param name for toolbox test

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Jianbin He
2007-03-13 19:23:19 +00:00
parent eb758843a4
commit 5e3085d258
3 changed files with 7 additions and 8 deletions
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tools/filters/axt_to_concat_fasta.xml
+3 -3
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@@ -1,9 +1,9 @@
<tool id="axt_to_concat_fasta" name="AXT to concatenated FASTA">
<description>Converts an AXT formated file to a concatenated FASTA alignment</description>
<command interpreter="python2.4">axt_to_concat_fasta.py $dbkey_1 $dbkey_2 &lt; $axt_file &gt; $out_file1</command>
<command interpreter="python2.4">axt_to_concat_fasta.py $dbkey_1 $dbkey_2 &lt; $axt_input &gt; $out_file1</command>
<inputs>
<page>
<param format="axt" name="axt_file" type="data" label="AXT file"/>
<param format="axt" name="axt_input" type="data" label="AXT file"/>
<param label="Genome" name="dbkey_1" type="select" dynamic_options="get_available_builds()"/>
<param label="Genome" name="dbkey_2" type="select" dynamic_options="get_available_builds()"/>
@@ -15,7 +15,7 @@
</outputs>
<tests>
<test>
<param name="axt_file" value="1.axt" />
<param name="axt_input" value="1.axt" />
<param name="dbkey_1" value='hg17' />
<param name="dbkey_2" value="panTro1" />
<output name="out_file1" file="axt_to_concat_fasta.dat" />
tools/filters/axt_to_fasta.xml
+3 -4
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@@ -1,10 +1,9 @@
<tool id="axt_to_fasta" name="AXT to FASTA">
<description>Converts an AXT formated file to FASTA format</description>
<command interpreter="python2.4">axt_to_fasta.py $dbkey_1 $dbkey_2 &lt; $axt_file &gt; $out_file1</command>
<command interpreter="python2.4">axt_to_fasta.py $dbkey_1 $dbkey_2 &lt; $axt_input &gt; $out_file1</command>
<inputs>
<page>
<param format="axt" name="axt_file" type="data" label="AXT file"/>
<param format="axt" name="axt_input" type="data" label="AXT file"/>
<param label="Genome" name="dbkey_1" type="select" dynamic_options="get_available_builds()"/>
<param label="Genome" name="dbkey_2" type="select" dynamic_options="get_available_builds()"/>
@@ -15,7 +14,7 @@
</outputs>
<tests>
<test>
<param name="axt_file" value="1.axt" />
<param name="axt_input" value="1.axt" />
<param name="dbkey_1" value='hg17' />
<param name="dbkey_2" value="panTro1" />
<output name="out_file1" file="axt_to_fasta.dat" />
tools/filters/ucsc_gene_bed_to_exon_bed.xml
+1 -1
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@@ -2,7 +2,7 @@
<description>expander</description>
<command interpreter="python">ucsc_gene_bed_to_exon_bed.py --input=$input1 --output=$out_file1 --region=$region "--exons"</command>
<inputs>
<param name="input1" type="data" format="interval" label="UCSC Gene Table"/>
<param name="input1" type="data" format="bed" label="UCSC Gene Table"/>
<param name="region" type="select">
<label>Feature Type</label>
<option value="transcribed">Coding + UTR</option>