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Updated Freebayes to set dbkey on output file

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This commit is contained in:
Kelly Vincent
2011-05-09 16:40:44 -04:00
parent 78a4a14131
commit 5d09de4785
1 changed files with 3 additions and 3 deletions
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tools/human_genome_variation/freebayes.xml
+3 -3
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@@ -1,5 +1,5 @@
<?xml version="1.0"?>
<tool id="freebayes_wrapper" name="Call SNPS with Freebayes" version="0.4.2">
<tool id="freebayes_wrapper" name="Call SNPS with Freebayes" version="0.5.0">
<requirements>
<requirement type="package">freebayes</requirement>
</requirements>
@@ -39,7 +39,7 @@
#end if
</command>
<inputs>
<param format="fasta" name="reference" type="data" label="Reference File"/>
<param format="fasta" name="reference" type="data" metadata_name="dbkey" label="Reference File"/>
<param format="bam" name="bamfile" type="data" label="Bam Alignment File"/>
<conditional name="params">
<param name="source_select" type="select" label="Freebayes Settings to Use" help="For straight forward mapping needs use Commonly Used settings. If you want full control use Full Parameter List">
@@ -108,7 +108,7 @@
</conditional>
</inputs>
<outputs>
<data format="vcf" name="output"/>
<data format="vcf" name="output" metadata_source="reference" />
</outputs>
<tests>
<test>