opensource/galaxy
3
0
Fork 0
mirror of https://github.com/galaxyproject/galaxy.git synced 2026-09-21 13:50:20 +08:00
Code Issues Packages Projects Releases Wiki Activity

Bump ncb-datasets-cli dependency to 13.14.0

Browse Source 
Fixes

```
panic: runtime error: invalid memory address or nil pointer dereference
[signal SIGSEGV: segmentation violation code=0x1 addr=0x10 pc=0x8a3fea]

goroutine 1 [running]:
main/datasets/datasets.downloadData(0xc000010380, 0x0, 0x0, 0x0, 0x7ffe36956316, 0x62, 0xffffffffffffffff, 0x0, 0x0)
	src/datasets/datasets/Download.go:41 +0xea
main/datasets/datasets.downloadAssembly(0xc000069100, 0x7ffe36956316, 0x62, 0x8ef4a0, 0xc000010298)
	src/datasets/datasets/DownloadGenome.go:63 +0x294
main/datasets/datasets.glob..func1(0xd9d080, 0xc000074730, 0x0, 0x5, 0x0, 0x0)
	src/datasets/datasets/Download.go:106 +0x2a7
github.com/spf13/cobra.(*Command).execute(0xd9d080, 0xc0000746e0, 0x5, 0x5, 0xd9d080, 0xc0000746e0)
	external/com_github_spf13_cobra/command.go:842 +0x472
github.com/spf13/cobra.(*Command).ExecuteC(0xd9cde0, 0x4686c5, 0xc000000180, 0x200000003)
	external/com_github_spf13_cobra/command.go:950 +0x375
github.com/spf13/cobra.(*Command).Execute(...)
	external/com_github_spf13_cobra/command.go:887
main/datasets/datasets.Execute()
	src/datasets/datasets/root.go:444 +0x31
main.main()
	src/cmd/datasets/main.go:10 +0x25
```
This commit is contained in:
mvdbeek
2022-05-03 17:13:16 +02:00
parent c08dea5c19
commit 5c014d2048
1 changed files with 2 additions and 2 deletions
Download Patch File Download Diff File Expand all files Collapse all files
tools/data_source/ncbi_datasets.xml
+2 -2
View File
@@ -1,10 +1,10 @@
<tool name="NCBI Datasets Genomes" id="ncbi_datasets_source" tool_type="data_source" version="1.0" profile="21.09">
<tool name="NCBI Datasets Genomes" id="ncbi_datasets_source" tool_type="data_source" version="1.1" profile="21.09">
<description>import data from the NCBI Datasets Genomes page</description>
<edam_operations>
<edam_operation>operation_0224</edam_operation>
</edam_operations>
<requirements>
<requirement type="package" version="12.11.0">ncbi-datasets-cli</requirement>
<requirement type="package" version="13.14.0">ncbi-datasets-cli</requirement>
</requirements>
<version_command>datasets version</version_command>
<command><![CDATA[