style: apply isort/black (tox -e format)

lib/galaxy/tool_source_store/database.py

@@ -113,9 +113,7 @@ class DatabaseToolSourceStore(ToolSourceStore):
     def get(self, hash: str) -> StoredToolSource | None:
         """Retrieve a tool source by hash."""
         with self._read_session() as session:
-            model = session.execute(
-                select(ToolSourceRecord).where(ToolSourceRecord.hash == hash)
-            ).scalar_one_or_none()
+            model = session.execute(select(ToolSourceRecord).where(ToolSourceRecord.hash == hash)).scalar_one_or_none()
             if not model:
                 return None
             return self._model_to_stored(model)

lib/galaxy/tool_source_store/populator.py

@@ -44,9 +44,19 @@ from typing import (
     cast,
 )
 
+from kombu import Connection
+from kombu.pools import producers
+
+from galaxy.config import GalaxyAppConfiguration
+from galaxy.datatypes.registry import Registry
+from galaxy.model import set_datatypes_registry
+from galaxy.model.mapping import init_models_from_config
+from galaxy.model.scoped_session import galaxy_scoped_session
+from galaxy.queues import galaxy_exchange
 from galaxy.tool_source_store import (
     _build_default_store,
     build_named_store,
+    build_tool_source_store,
     ReadOnlyStoreError,
     StoredToolSource,
     ToolSourceStore,
@@ -59,16 +69,6 @@ from galaxy.tool_source_store.index import (
     ToolIndex,
     ToolIndexEntry,
 )
-from kombu import Connection
-from kombu.pools import producers
-
-from galaxy.config import GalaxyAppConfiguration
-from galaxy.datatypes.registry import Registry
-from galaxy.model import set_datatypes_registry
-from galaxy.model.mapping import init_models_from_config
-from galaxy.model.scoped_session import galaxy_scoped_session
-from galaxy.queues import galaxy_exchange
-from galaxy.tool_source_store import build_tool_source_store
 from galaxy.tool_source_store.search import (
     ToolSearchTuning,
     ToolWhooshIndex,

lib/galaxy/tool_util/toolbox/lineages/factory.py

@@ -1,7 +1,10 @@
+from collections.abc import (
+    Callable,
+    Iterable,
+)
 from typing import (
     TYPE_CHECKING,
 )
-from collections.abc import Callable, Iterable
 
 from galaxy.util.tool_version import remove_version_from_guid
 from .interface import ToolLineage

lib/galaxy/tools/lazy_toolbox.py

@@ -19,8 +19,11 @@ from typing import (
 from uuid import UUID
 
 from cachetools import LRUCache
-from galaxy.tool_util.version import parse_version
 
+from galaxy.exceptions import (
+    ObjectNotFound,
+    RequestParameterInvalidException,
+)
 from galaxy.tool_source_store import (
     StoredToolSource,
     ToolSourceStore,
@@ -31,16 +34,13 @@ from galaxy.tool_source_store.index import (
     ToolIndexEntry,
 )
 from galaxy.tool_source_store.populator import populate_store_inline
-from galaxy.exceptions import (
-    ObjectNotFound,
-    RequestParameterInvalidException,
-)
 from galaxy.tool_util.id_util import extract_short_id_from_guid
-from galaxy.tool_util.toolbox.base import ToolConfRepository
-from galaxy.util.tool_version import remove_version_from_guid
 from galaxy.tool_util.parser import get_tool_source
+from galaxy.tool_util.toolbox.base import ToolConfRepository
 from galaxy.tool_util.toolbox.lineages.interface import ToolLineage
 from galaxy.tool_util.toolbox.panel import ToolSection
+from galaxy.tool_util.version import parse_version
+from galaxy.util.tool_version import remove_version_from_guid
 from . import (
     create_tool_from_source,
     ToolBox,
@@ -327,9 +327,7 @@ class LazyTool:
         from ``_tools_by_id``.
         """
         try:
-            return self._materialize().to_dict(
-                trans, link_details=link_details, tool_help=tool_help, **kw
-            )
+            return self._materialize().to_dict(trans, link_details=link_details, tool_help=tool_help, **kw)
         except Exception as e:
             log.warning("LazyTool.to_dict: materialise failed for %s, falling back to entry: %s", self.id, e)
             return self.to_panel_entry(trans)
@@ -864,9 +862,7 @@ class LazyToolBox(ToolBox):
 
         return tool
 
-    def _create_tool_from_stored_source(
-        self, stored: StoredToolSource, entry: ToolIndexEntry | None = None
-    ) -> "Tool":
+    def _create_tool_from_stored_source(self, stored: StoredToolSource, entry: ToolIndexEntry | None = None) -> "Tool":
         """Create a Tool object from stored source."""
         tool_source = get_tool_source(
             raw_tool_source=stored.raw_source,

lib/galaxy/tools/special_tools.py

@@ -33,8 +33,7 @@ def hidden_lib_tool_paths() -> list[str]:
     """
     base = os.path.dirname(__file__)
     return [
-        os.path.abspath(os.path.join(base, p))
-        for p in (*SPECIAL_TOOLS.values(), *_EXTRA_HIDDEN_LIB_TOOLS.values())
+        os.path.abspath(os.path.join(base, p)) for p in (*SPECIAL_TOOLS.values(), *_EXTRA_HIDDEN_LIB_TOOLS.values())
     ]