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Rename vitessce_json file_ext to vitessce.json
Pretty sure this hasn't been used yet, added in https://github.com/galaxyproject/galaxy/pull/20027/files. A proper json extension allows json tooling to work with this file.
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@@ -5,7 +5,7 @@
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<data_sources>
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<data_source>
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<model_class>HistoryDatasetAssociation</model_class>
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<test test_attr="ext">vitesscejson</test>
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<test test_attr="ext">vitessce.json</test>
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</data_source>
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</data_sources>
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<params>
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@@ -145,7 +145,7 @@
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<datatype extension="geojson" type="galaxy.datatypes.text:GeoJson" mimetype="application/json" display_in_upload="True">
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<visualization plugin="openlayers" />
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</datatype>
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<datatype extension="vitesscejson" type="galaxy.datatypes.text:VitessceJson" mimetype="application/json" display_in_upload="True">
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<datatype extension="vitessce.json" type="galaxy.datatypes.text:VitessceJson" mimetype="application/json" display_in_upload="True">
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<visualization plugin="vitessce" />
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</datatype>
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<datatype extension="data_manager_json" type="galaxy.datatypes.text:DataManagerJson" mimetype="application/json" subclass="true" display_in_upload="false"/>
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@@ -611,11 +611,11 @@
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</datatype>
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<datatype extension="nhx" type="galaxy.datatypes.data:Newick" subclass="true" display_in_upload="true" description="The New Hampshire X (NHX) format is an extension to Newick that adds key-value data to Newick nodes.">
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<infer_from suffix="nhx" />
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</datatype>
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</datatype>
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<datatype extension="nex" type="galaxy.datatypes.data:Nexus" display_in_upload="true"/>
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<datatype extension="iqtree" type="galaxy.datatypes.text:IQTree">
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<infer_from suffix="iqtree" />
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</datatype>
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</datatype>
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<datatype extension="mldist" type="galaxy.datatypes.mothur:SquareDistanceMatrix"/>
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<!-- Start RGenetics Datatypes -->
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<datatype extension="affybatch" type="galaxy.datatypes.genetics:Affybatch" display_in_upload="true"/>
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@@ -655,7 +655,7 @@
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<!-- deprecated, should use excel.xls -->
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<datatype extension="xls" type="galaxy.datatypes.binary:ExcelXls">
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<infer_from suffix="xls" />
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</datatype>
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</datatype>
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<!-- End RGenetics Datatypes -->
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<datatype extension="ipynb" type="galaxy.datatypes.text:Ipynb" display_in_upload="true">
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<infer_from suffix="ipynb" />
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@@ -18,4 +18,3 @@
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}
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]
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}
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@@ -662,12 +662,7 @@ class VitessceJson(Json):
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https://www.npmjs.com/package/@vitessce/json-schema
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"""
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file_ext = "vitesscejson"
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def set_peek(self, dataset: DatasetProtocol, **kwd) -> None:
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super().set_peek(dataset)
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if not dataset.dataset.purged:
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dataset.blurb = "VitessceJSON"
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file_ext = "vitessce.json"
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def sniff_prefix(self, file_prefix: FilePrefix) -> bool:
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"""
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@@ -677,7 +672,7 @@ class VitessceJson(Json):
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>>> fname = get_test_fname( '1.json' )
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>>> VitessceJson().sniff( fname )
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False
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>>> fname = get_test_fname( '1.vitesscejson' )
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>>> fname = get_test_fname( '1.vitessce.json' )
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>>> VitessceJson().sniff( fname )
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True
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"""
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