mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-24 16:30:27 +08:00
update ucsc builds.txt. now blat tool should pass functional test.
also update boxplot config file.
This commit is contained in:
Wen-Yu Chung
+720
-64
@@ -5,15 +5,16 @@ hg17 Human May 2004 (hg17)
|
||||
hg16 Human July 2003 (hg16)
|
||||
hg15 Human Apr. 2003 (hg15)
|
||||
hg13 Human Nov. 2002 (hg13)
|
||||
panTro2 Chimp Jan. 2006 (panTro2)
|
||||
venter1 J. Craig Venter Sep. 2007 (venter1)
|
||||
panTro2 Chimp Mar. 2006 (panTro2)
|
||||
panTro1 Chimp Nov. 2003 (panTro1)
|
||||
ponAbe2 Orangutan July 2007 (ponAbe2)
|
||||
rheMac2 Rhesus Jan. 2006 (rheMac2)
|
||||
rheMac1 Rhesus Jan. 2005 (rheMac1)
|
||||
canFam2 Dog May 2005 (canFam2)
|
||||
canFam1 Dog July 2004 (canFam1)
|
||||
bosTau2 Cow Mar. 2005 (bosTau2)
|
||||
bosTau1 Cow Sep. 2004 (bosTau1)
|
||||
mm8 Mouse Feb 2006 (mm8)
|
||||
calJac1 Marmoset June 2007 (calJac1)
|
||||
otoGar1 Bushbaby Dec. 2006 (otoGar1)
|
||||
tupBel1 TreeShrew Dec. 2006 (tupBel1)
|
||||
mm9 Mouse July 2007 (mm9)
|
||||
mm8 Mouse Feb. 2006 (mm8)
|
||||
mm7 Mouse Aug. 2005 (mm7)
|
||||
mm6 Mouse Mar. 2005 (mm6)
|
||||
mm5 Mouse May 2004 (mm5)
|
||||
@@ -21,62 +22,95 @@ mm4 Mouse Oct. 2003 (mm4)
|
||||
mm3 Mouse Feb. 2003 (mm3)
|
||||
mm2 Mouse Feb. 2002 (mm2)
|
||||
rn4 Rat Nov. 2004 (rn4)
|
||||
galGal3 Chicken May 2006 (galGal3)
|
||||
rn3 Rat June 2003 (rn3)
|
||||
rn2 Rat Jan. 2003 (rn2)
|
||||
oryCun1 Rabbit May. 2005 (oryCun1)
|
||||
dasNov1 Armadillo May. 2005 (dasNov1)
|
||||
loxAfr1 Elephant May. 2005 (loxAfr1)
|
||||
echTel1 Tenrec July. 2005 (echTel1)
|
||||
monDom4 Opossum Jan 2006 (monDom4)
|
||||
oryCun1 Rabbit May 2005 (oryCun1)
|
||||
felCat3 Cat Mar. 2006 (felCat3)
|
||||
canFam2 Dog May 2005 (canFam2)
|
||||
canFam1 Dog July 2004 (canFam1)
|
||||
equCab1 Horse Jan. 2007 (equCab1)
|
||||
bosTau4 Cow Oct. 2007 (bosTau4)
|
||||
bosTau3 Cow Aug. 2006 (bosTau3)
|
||||
bosTau2 Cow Mar. 2005 (bosTau2)
|
||||
bosTau1 Cow Sep. 2004 (bosTau1)
|
||||
choHof1 Sloth Feb. 2008 (choHof1)
|
||||
dasNov1 Armadillo May 2005 (dasNov1)
|
||||
echTel1 Tenrec July 2005 (echTel1)
|
||||
loxAfr1 Elephant May 2005 (loxAfr1)
|
||||
monDom4 Opossum Jan. 2006 (monDom4)
|
||||
monDom1 Opossum Oct. 2004 (monDom1)
|
||||
ornAna1 Platypus Mar. 2007 (ornAna1)
|
||||
galGal3 Chicken May 2006 (galGal3)
|
||||
galGal2 Chicken Feb. 2004 (galGal2)
|
||||
anoCar1 Lizard Feb. 2007 (anoCar1)
|
||||
xenTro2 X. tropicalis Aug. 2005 (xenTro2)
|
||||
xenTro1 X. tropicalis Oct. 2004 (xenTro1)
|
||||
danRer5 Zebrafish July 2007 (danRer5)
|
||||
danRer4 Zebrafish Mar. 2006 (danRer4)
|
||||
danRer3 Zebrafish May 2005 (danRer3)
|
||||
danRer2 Zebrafish June 2004 (danRer2)
|
||||
danRer1 Zebrafish Nov. 2003 (danRer1)
|
||||
tetNig1 Tetraodon Feb. 2004 (tetNig1)
|
||||
fr2 Fugu Oct. 2004 (fr2)
|
||||
fr1 Fugu Aug. 2002 (fr1)
|
||||
gasAcu1 Stickleback Feb. 2006 (gasAcu1)
|
||||
oryLat1 Medaka Apr. 2006 (oryLat1)
|
||||
petMar1 Lamprey Mar. 2007 (petMar1)
|
||||
borEut13 Boreoeutherian Apr. 24. 2006 (borEut13)
|
||||
canHg12 Boreoeutherian Nov. 19. 2005 (canHg12)
|
||||
rodEnt13 Rodent Apr. 24. 2006 (rodEnt13)
|
||||
priMat13 Primate Apr. 24. 2006 (priMat13)
|
||||
nonAfr13 Non-Afrotheria Apr. 24. 2006 (nonAfr13)
|
||||
lauRas13 Laurasiatheria Apr. 24. 2006 (lauRas13)
|
||||
homIni14 Hominidae Oct. 1. 2006 (homIni14)
|
||||
homIni13 Hominidae Apr. 24. 2006 (homIni13)
|
||||
cioSav2 C. savignyi July 2005 (cioSav2)
|
||||
gliRes13 Glires Apr. 24. 2006 (gliRes13)
|
||||
eutHer13 Eutheria Apr. 24. 2006 (eutHer13)
|
||||
euaGli13 Euarchontoglires Apr. 24. 2006 (euaGli13)
|
||||
catArr1 Catarrhini June 13. 2006 (catArr1)
|
||||
afrOth13 Afrotheria Apr. 24. 2006 (afrOth13)
|
||||
braFlo1 Lancelet Mar. 2006 (braFlo1)
|
||||
ci2 C. intestinalis Mar. 2005 (ci2)
|
||||
ci1 C. intestinalis Dec. 2002 (ci1)
|
||||
cioSav2 C. savignyi July 2005 (cioSav2)
|
||||
cioSav1 C. savignyi Sept. 2001 (cioSav1)
|
||||
strPur2 S. purpuratus Sep. 2006 (strPur2)
|
||||
strPur1 S. purpuratus Apr. 2005 (strPur1)
|
||||
ce4 C. elegans Jan. 2007 (ce4)
|
||||
ce3 C. elegans March 2005 (ce3)
|
||||
ce2 C. elegans Mar. 2004 (ce2)
|
||||
ce1 C. elegans May 2003 (ce1)
|
||||
caePb1 C. brenneri Jan. 2007 (caePb1)
|
||||
cb3 C. briggsae Jan. 2007 (cb3)
|
||||
cb2 C. briggsae Aug 2005 (cb2)
|
||||
cb1 C. briggsae July 2002 (cb1)
|
||||
caeRem2 C. remanei Mar. 2006 (caeRem2)
|
||||
caeRem1 C. remanei March 2005 (caeRem1)
|
||||
priPac1 P. pacificus Feb. 2007 (priPac1)
|
||||
dm3 D. melanogaster Apr. 2006 (dm3)
|
||||
dm2 D. melanogaster Apr. 2004 (dm2)
|
||||
dm1 D. melanogaster Jan. 2003 (dm1)
|
||||
droSim1 D. simulans Apr. 2005 (droSim1)
|
||||
droSec1 D. sechellia Oct. 2005 (droSec1)
|
||||
dm1 D. melanogaster Jan. 2003 (dm1)
|
||||
droYak2 D. yakuba Nov. 2005 (droYak2)
|
||||
droYak1 D. yakuba Apr. 2004 (droYak1)
|
||||
droEre1 D. erecta Aug. 2005 (droEre1)
|
||||
droAna2 D. ananassae Aug. 2005 (droAna2)
|
||||
droPer1 D. persimilis Oct. 2005 (droPer1)
|
||||
droAna1 D. ananassae July 2004 (droAna1)
|
||||
dp3 D. pseudoobscura Nov. 2004 (dp3)
|
||||
dp2 D. pseudoobscura Aug. 2003 (dp2)
|
||||
droPer1 D. persimilis Oct. 2005 (droPer1)
|
||||
droVir2 D. virilis Aug. 2005 (droVir2)
|
||||
droVir1 D. virilis July 2004 (droVir1)
|
||||
droMoj2 D. mojavensis Aug. 2005 (droMoj2)
|
||||
droMoj1 D. mojavensis Aug. 2004 (droMoj1)
|
||||
droGri1 D. grimshawi Aug. 2005 (droGri1)
|
||||
droAna1 D. ananassae July 2004 (droAna1)
|
||||
apiMel2 A. mellifera Jan. 2005 (apiMel2)
|
||||
triCas2 T. castaneum Sept. 2005 (triCas2)
|
||||
apiMel1 A. mellifera July 2004 (apiMel1)
|
||||
ce3 C. elegans March 2005 (ce3)
|
||||
anoGam1 A. gambiae Feb. 2003 (anoGam1)
|
||||
ce2 C. elegans Mar. 2004 (ce2)
|
||||
ce1 C. elegans May 2003 (ce1)
|
||||
cb2 C. briggsae Aug 2005 (cb2)
|
||||
cb1 C. briggsae July 2002 (cb1)
|
||||
strPur1 S. purpuratus April 2005 (strPur1)
|
||||
sacCer1 S. cerevisiae Oct. 2003 (sacCer1)
|
||||
caeRem1 C. remanei March 2005 (caeRem1)
|
||||
apiMel2 A. mellifera Jan. 2005 (apiMel2)
|
||||
apiMel1 A. mellifera July 2004 (apiMel1)
|
||||
triCas2 T. castaneum Sep. 2005 (triCas2)
|
||||
falciparum P. falciparum Plasmodium falciparum (falciparum)
|
||||
sacCer1 S. cerevisiae Oct. 2003 (sacCer1)
|
||||
sc1 SARS coronavirus Apr. 2003 (sc1)
|
||||
campJeju1 Campylobacter jejuni 02/25/2000 (campJeju1)
|
||||
campJeju_RM1221_1 Campylobacter jejuni RM1221 01/07/2005 (campJeju_RM1221_1)
|
||||
@@ -94,39 +128,661 @@ vibrVuln_YJ016_1 Vibrio vulnificus YJ016 12/06/2003 (vibrVuln_YJ016_1)
|
||||
heliHepa1 Helicobacter hepaticus 06/18/2003 (heliHepa1)
|
||||
heliPylo_26695_1 Helicobacter pylori 26695 08/07/1997 (heliPylo_26695_1)
|
||||
heliPylo_J99_1 Helicobacter pylori J99 01/29/1999 (heliPylo_J99_1)
|
||||
#
|
||||
#Harvested from http://www.wormbase.org/db/seq/gbrowse/wormbase/
|
||||
#
|
||||
#brugia Brugia malayi (current release)
|
||||
#briggsae_cb25 C. briggsae (cb25.agp8 release; 2003)
|
||||
#briggsae C. briggsae (current release)
|
||||
#elegans C. elegans (current release)
|
||||
#elegans_gmap C. elegans (genetic map)
|
||||
#elegans_pmap C. elegans (physical map)
|
||||
#nGASP C. elegans WS160 Gene Prediction Assessment Browser
|
||||
#ws77 C. elegans WS77 gene predictions
|
||||
#remanei C. remanei (preliminary analysis)
|
||||
#fly D. melanogaster (via Gadfly Release 2)
|
||||
#fly31 D. melanogaster (via Gadfly Release 3.1)
|
||||
#nGASP_submissions nGASP WS160 Phase 1 Gene Predictions
|
||||
#yeast_chr1 S. cerevisiae chromosome I
|
||||
#
|
||||
#Harvested from http://flybase.bio.indiana.edu/cgi-bin/gbrowse/dmel/
|
||||
#
|
||||
#dana D. ananassae Genome
|
||||
#dere D. erecta Genome
|
||||
#dgri D. grimshawi Genome
|
||||
#dmel D. melanogaster Genome (R5.1)
|
||||
#dmoj D. mojavensis Genome
|
||||
#dper D. persimilis Genome
|
||||
#dpse D. pseudoobscura Genome (R2.0)
|
||||
#dsec D. sechellia Genome
|
||||
#dsim D. simulans Genome
|
||||
#dvir D. virilis Genome
|
||||
#dwil D. willistoni Genome
|
||||
#dyak D. yakuba Genome
|
||||
#dmelstocks Insertions in Stock Collections
|
||||
#
|
||||
# Added for gbrowse prototype (TODO: remove)
|
||||
#
|
||||
#ctgA GBrowse prototype volvox (ctgA)
|
||||
16079 Mycobacterium sp. JLS (16079)
|
||||
symbTher_IAM14863 Symbiobacterium thermophilum IAM 14863 (symbTher_IAM14863)
|
||||
16070 Yersinia pseudotuberculosis IP 31758 (16070)
|
||||
18883 Mycobacterium tuberculosis H37Ra (18883)
|
||||
nocaJS61 Nocardioides sp. JS614 (nocaJS61)
|
||||
12521 Clostridium perfringens SM101 (12521)
|
||||
acidCryp_JF_5 Acidiphilium cryptum JF-5 (acidCryp_JF_5)
|
||||
lactLact Lactococcus lactis subsp. lactis Il1403 (lactLact)
|
||||
13082 Bacillus licheniformis ATCC 14580 (13082)
|
||||
344 Rhizobium leguminosarum bv. viciae 3841 (344)
|
||||
siliPome_DSS_3 Silicibacter pomeroyi DSS-3 (siliPome_DSS_3)
|
||||
paraSp_UWE25 Candidatus Protochlamydia amoebophila UWE25 (paraSp_UWE25)
|
||||
geobKaus_HTA426 Geobacillus kaustophilus HTA426 (geobKaus_HTA426)
|
||||
rhizEtli_CFN_42 Rhizobium etli CFN 42 (rhizEtli_CFN_42)
|
||||
13162 Streptococcus thermophilus LMG 18311 (13162)
|
||||
13163 Streptococcus thermophilus CNRZ1066 (13163)
|
||||
18817 Methylobacterium radiotolerans JCM 2831 (18817)
|
||||
28109 Bartonella tribocorum CIP 105476 (28109)
|
||||
dichNodo_VCS1703A Dichelobacter nodosus VCS1703A (dichNodo_VCS1703A)
|
||||
12931 Xanthomonas oryzae pv. oryzae KACC10331 (12931)
|
||||
eschColi_O157H7 Escherichia coli O157:H7 str. Sakai (eschColi_O157H7)
|
||||
burk383 Burkholderia sp. 383 (burk383)
|
||||
15759 Psychrobacter sp. PRwf-1 (15759)
|
||||
15758 Staphylococcus aureus subsp. aureus JH1 (15758)
|
||||
27835 Microcystis aeruginosa NIES-843 (27835)
|
||||
campJeju_81_176 Campylobacter jejuni subsp. jejuni 81-176 (campJeju_81_176)
|
||||
15751 Rhodopseudomonas palustris BisA53 (15751)
|
||||
15750 Rhodopseudomonas palustris BisB18 (15750)
|
||||
15757 Staphylococcus aureus subsp. aureus JH9 (15757)
|
||||
15756 Xanthobacter autotrophicus Py2 (15756)
|
||||
15755 Rhodobacter sphaeroides ATCC 17025 (15755)
|
||||
15754 Rhodobacter sphaeroides ATCC 17029 (15754)
|
||||
13603 Ralstonia eutropha H16 (13603)
|
||||
shewPutrCN32 Shewanella putrefaciens CN-32 (shewPutrCN32)
|
||||
aerPer1 Aeropyrum pernix K1 (aerPer1)
|
||||
18255 Bacillus thuringiensis str. Al Hakam (18255)
|
||||
acinSp_ADP1 Acinetobacter sp. ADP1 (acinSp_ADP1)
|
||||
anapMarg_ST_MARIES Anaplasma marginale str. St. Maries (anapMarg_ST_MARIES)
|
||||
297 Xanthomonas axonopodis pv. citri str. 306 (297)
|
||||
desuPsyc_LSV54 Desulfotalea psychrophila LSv54 (desuPsyc_LSV54)
|
||||
17227 Desulfovibrio vulgaris subsp. vulgaris DP4 (17227)
|
||||
190 Yersinia enterocolitica subsp. enterocolitica 8081 (190)
|
||||
193 Clostridium botulinum A str. ATCC 3502 (193)
|
||||
270 Streptococcus pyogenes str. Manfredo (270)
|
||||
16252 Synechococcus sp. JA-2-3B'a(2-13) (16252)
|
||||
16251 Synechococcus sp. JA-3-3Ab (16251)
|
||||
16319 Arcobacter butzleri RM4018 (16319)
|
||||
276 Listeria monocytogenes EGD-e (276)
|
||||
277 Streptococcus pneumoniae TIGR4 (277)
|
||||
13427 Heliobacterium modesticaldum Ice1 (13427)
|
||||
279 Staphylococcus epidermidis ATCC 12228 (279)
|
||||
19979 Flavobacterium psychrophilum JIP02/86 (19979)
|
||||
13548 Prochlorococcus marinus str. AS9601 (13548)
|
||||
16700 Yersinia pestis Pestoides F (16700)
|
||||
therTher_HB8 Thermus thermophilus HB8 (therTher_HB8)
|
||||
28035 Streptococcus pneumoniae Hungary19A-6 (28035)
|
||||
19575 Bradyrhizobium sp. ORS278 (19575)
|
||||
18083 Escherichia coli C str. ATCC 8739 (18083)
|
||||
methStad1 Methanosphaera stadtmanae DSM 3091 (methStad1)
|
||||
magnMagn_AMB_1 Magnetospirillum magneticum AMB-1 (magnMagn_AMB_1)
|
||||
13901 Thermoanaerobacter pseudethanolicus ATCC 33223 (13901)
|
||||
methBurt2 Methanococcoides burtonii DSM 6242 (methBurt2)
|
||||
13908 Rhodoferax ferrireducens T118 (13908)
|
||||
13909 Pseudomonas putida F1 (13909)
|
||||
16400 Haemophilus influenzae PittEE (16400)
|
||||
16401 Haemophilus influenzae PittGG (16401)
|
||||
100 Mycoplasma pulmonis UAB CTIP (100)
|
||||
methMari_C7 Methanococcus maripaludis C7 (methMari_C7)
|
||||
106 Halobacterium salinarum R1 (106)
|
||||
geobSulf Geobacter sulfurreducens PCA (geobSulf)
|
||||
38 Haemophilus ducreyi 35000HP (38)
|
||||
28247 Synechococcus sp. PCC 7002 (28247)
|
||||
16791 Coxiella burnetii RSA 331 (16791)
|
||||
procMari_CCMP1375 Prochlorococcus marinus subsp. marinus str. CCMP1375 (procMari_CCMP1375)
|
||||
31 Klebsiella pneumoniae subsp. pneumoniae MGH 78578 (31)
|
||||
oenoOeni_PSU_1 Oenococcus oeni PSU-1 (oenoOeni_PSU_1)
|
||||
16817 Pseudomonas stutzeri A1501 (16817)
|
||||
wiggBrev Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis (wiggBrev)
|
||||
10639 Mycoplasma hyopneumoniae 7448 (10639)
|
||||
10638 Yersinia pestis biovar Microtus str. 91001 (10638)
|
||||
caldMaqu1 Caldivirga maquilingensis IC-167 (caldMaqu1)
|
||||
salmEnte_PARATYPI_ATC Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 (salmEnte_PARATYPI_ATC)
|
||||
onioYell_PHYTOPLASMA Onion yellows phytoplasma OY-M (onioYell_PHYTOPLASMA)
|
||||
18459 Francisella tularensis subsp. tularensis WY96-3418 (18459)
|
||||
334 Streptococcus agalactiae NEM316 (334)
|
||||
mariAqua_VT8 Marinobacter aquaeolei VT8 (mariAqua_VT8)
|
||||
16719 Fervidobacterium nodosum Rt17-B1 (16719)
|
||||
330 Streptococcus agalactiae 2603V/R (330)
|
||||
333 Streptococcus mutans UA159 (333)
|
||||
9638 Lactobacillus johnsonii NCC 533 (9638)
|
||||
17729 Anaeromyxobacter sp. Fw109-5 (17729)
|
||||
shewLoihPV4 Shewanella loihica PV-4 (shewLoihPV4)
|
||||
candPela_UBIQUE_HTCC1 Candidatus Pelagibacter ubique HTCC1062 (candPela_UBIQUE_HTCC1)
|
||||
myxoXant_DK_1622 Myxococcus xanthus DK 1622 (myxoXant_DK_1622)
|
||||
9636 Rickettsia rickettsii str. 'Sheila Smith' (9636)
|
||||
salmTyph_TY2 Salmonella enterica subsp. enterica serovar Typhi str. Ty2 (salmTyph_TY2)
|
||||
chloChlo_CAD3 Chlorobium chlorochromatii CaD3 (chloChlo_CAD3)
|
||||
mesoFlor_L1 Mesoplasma florum L1 (mesoFlor_L1)
|
||||
28921 Acinetobacter baumannii (28921)
|
||||
hermArse Herminiimonas arsenicoxydans (hermArse)
|
||||
methMaze1 Methanosarcina mazei Go1 (methMaze1)
|
||||
17343 Sphingomonas wittichii RW1 (17343)
|
||||
99 Mycoplasma pneumoniae M129 (99)
|
||||
13643 Synechococcus sp. CC9605 (13643)
|
||||
13642 Synechococcus sp. WH 7803 (13642)
|
||||
lawsIntr_PHE_MN1_00 Lawsonia intracellularis PHE/MN1-00 (lawsIntr_PHE_MN1_00)
|
||||
jannCCS1 Jannaschia sp. CCS1 (jannCCS1)
|
||||
91 Mycobacterium avium subsp. paratuberculosis K-10 (91)
|
||||
90 Mycobacterium leprae TN (90)
|
||||
92 Mycobacterium smegmatis str. MC2 155 (92)
|
||||
95 Tropheryma whipplei str. Twist (95)
|
||||
13649 Xanthomonas campestris pv. vesicatoria str. 85-10 (13649)
|
||||
13885 Chlamydia trachomatis A/HAR-13 (13885)
|
||||
13884 Rickettsia felis URRWXCal2 (13884)
|
||||
13887 Streptococcus pyogenes MGAS6180 (13887)
|
||||
13760 Corynebacterium glutamicum ATCC 13032 (13760)
|
||||
13888 Streptococcus pyogenes MGAS5005 (13888)
|
||||
ureaUrea Ureaplasma parvum serovar 3 str. ATCC 700970 (ureaUrea)
|
||||
streCoel Streptomyces coelicolor A3(2) (streCoel)
|
||||
orieTsut_BORYONG Orientia tsutsugamushi str. Boryong (orieTsut_BORYONG)
|
||||
polaJS66 Polaromonas sp. JS666 (polaJS66)
|
||||
rhodRubr_ATCC11170 Rhodospirillum rubrum ATCC 11170 (rhodRubr_ATCC11170)
|
||||
rhodRHA1 Rhodococcus sp. RHA1 (rhodRHA1)
|
||||
pireSp Rhodopirellula baltica SH 1 (pireSp)
|
||||
franTula_TULARENSIS Francisella tularensis subsp. tularensis SCHU S4 (franTula_TULARENSIS)
|
||||
syneSp_WH8102 Synechococcus sp. WH 8102 (syneSp_WH8102)
|
||||
19521 Clostridium botulinum A str. Hall (19521)
|
||||
238 Staphylococcus aureus subsp. aureus COL (238)
|
||||
15660 Prochlorococcus marinus str. NATL1A (15660)
|
||||
17823 Xylella fastidiosa M12 (17823)
|
||||
methPetr_PM1 Methylibium petroleiphilum PM1 (methPetr_PM1)
|
||||
237 Staphylococcus aureus subsp. aureus NCTC 8325 (237)
|
||||
thioCrun_XCL_2 Thiomicrospira crunogena XCL-2 (thioCrun_XCL_2)
|
||||
haloHalo1 Halobacterium sp. NRC-1 (haloHalo1)
|
||||
16190 Roseiflexus sp. RS-1 (16190)
|
||||
idioLoih_L2TR Idiomarina loihiensis L2TR (idioLoih_L2TR)
|
||||
18637 Methylobacterium extorquens PA1 (18637)
|
||||
sodaGlos_MORSITANS Sodalis glossinidius str. 'morsitans' (sodaGlos_MORSITANS)
|
||||
18633 Prochlorococcus marinus str. MIT 9215 (18633)
|
||||
mycoTube_H37RV Mycobacterium tuberculosis H37Rv (mycoTube_H37RV)
|
||||
polyQLWP Polynucleobacter sp. QLW-P1DMWA-1 (polyQLWP)
|
||||
peloLute_DSM273 Pelodictyon luteolum DSM 273 (peloLute_DSM273)
|
||||
burkCeno_AU_1054 Burkholderia cenocepacia AU 1054 (burkCeno_AU_1054)
|
||||
13942 Streptococcus sanguinis SK36 (13942)
|
||||
13943 Burkholderia mallei NCTC 10229 (13943)
|
||||
ente638 Enterobacter sp. 638 (ente638)
|
||||
13946 Burkholderia mallei NCTC 10247 (13946)
|
||||
13947 Burkholderia mallei SAVP1 (13947)
|
||||
16363 Streptococcus pyogenes MGAS9429 (16363)
|
||||
neorSenn_MIYAYAMA Neorickettsia sennetsu str. Miyayama (neorSenn_MIYAYAMA)
|
||||
heliAcin_SHEEBA Helicobacter acinonychis str. Sheeba (heliAcin_SHEEBA)
|
||||
16366 Streptococcus pyogenes MGAS10750 (16366)
|
||||
16365 Streptococcus pyogenes MGAS2096 (16365)
|
||||
13473 Nitrobacter hamburgensis X14 (13473)
|
||||
burkCepa_AMMD Burkholderia ambifaria AMMD (burkCepa_AMMD)
|
||||
methMari_C5_1 Methanococcus maripaludis C5 (methMari_C5_1)
|
||||
13478 Aster yellows witches'-broom phytoplasma AYWB (13478)
|
||||
13370 Actinobacillus succinogenes 130Z (13370)
|
||||
methBark1 Methanosarcina barkeri str. Fusaro (methBark1)
|
||||
geobMeta_GS15 Geobacter metallireducens GS-15 (geobMeta_GS15)
|
||||
eschColi_CFT073 Escherichia coli CFT073 (eschColi_CFT073)
|
||||
metMar1 Methanococcus maripaludis S2 (metMar1)
|
||||
enteFaec_V583 Enterococcus faecalis V583 (enteFaec_V583)
|
||||
17265 Francisella tularensis subsp. holarctica OSU18 (17265)
|
||||
shigFlex_2A Shigella flexneri 2a str. 301 (shigFlex_2A)
|
||||
erwiCaro_ATROSEPTICA Pectobacterium atrosepticum SCRI1043 (erwiCaro_ATROSEPTICA)
|
||||
pseuHalo_TAC125 Pseudoalteromonas haloplanktis TAC125 (pseuHalo_TAC125)
|
||||
17163 Campylobacter jejuni subsp. doylei 269.97 (17163)
|
||||
17161 Campylobacter curvus 525.92 (17161)
|
||||
10690 Mesorhizobium sp. BNC1 (10690)
|
||||
10694 Ehrlichia canis str. Jake (10694)
|
||||
10697 Mycoplasma mobile 163K (10697)
|
||||
25 Bordetella parapertussis 12822 (25)
|
||||
26 Bordetella pertussis Tohama I (26)
|
||||
16841 Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica) (16841)
|
||||
sulfToko1 Sulfolobus tokodaii str. 7 (sulfToko1)
|
||||
404 Lactobacillus brevis ATCC 367 (404)
|
||||
403 Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 (403)
|
||||
13920 Psychrobacter cryohalolentis K5 (13920)
|
||||
401 Lactococcus lactis subsp. cremoris SK11 (401)
|
||||
16137 Bradyrhizobium sp. BTAi1 (16137)
|
||||
uncuMeth_RCI uncultured methanogenic archaeon RC-I (uncuMeth_RCI)
|
||||
coryEffi_YS_314 Corynebacterium efficiens YS-314 (coryEffi_YS_314)
|
||||
13485 Parabacteroides distasonis ATCC 8503 (13485)
|
||||
409 Mycoplasma gallisepticum R (409)
|
||||
28743 Yersinia pseudotuberculosis YPIII (28743)
|
||||
19469 Escherichia coli SECEC SMS-3-5 (19469)
|
||||
psycArct_273_4 Psychrobacter arcticus 273-4 (psycArct_273_4)
|
||||
propAcne_KPA171202 Propionibacterium acnes KPA171202 (propAcne_KPA171202)
|
||||
acidJS42 Acidovorax sp. JS42 (acidJS42)
|
||||
chroSale_DSM3043 Chromohalobacter salexigens DSM 3043 (chroSale_DSM3043)
|
||||
19065 Clostridium kluyveri DSM 555 (19065)
|
||||
18801 Staphylococcus aureus subsp. aureus str. Newman (18801)
|
||||
13151 Shigella sonnei Ss046 (13151)
|
||||
18965 Sulfurovum sp. NBC37-1 (18965)
|
||||
18963 Nitratiruptor sp. SB155-2 (18963)
|
||||
18809 Methylobacterium sp. 4-46 (18809)
|
||||
tropWhip_TW08_27 Tropheryma whipplei TW08/27 (tropWhip_TW08_27)
|
||||
28135 Bordetella petrii DSM 12804 (28135)
|
||||
natrPhar1 Natronomonas pharaonis DSM 2160 (natrPhar1)
|
||||
370 Chlamydophila felis Fe/C-56 (370)
|
||||
377 Gluconacetobacter diazotrophicus PAl 5 (377)
|
||||
rubrXyla_DSM9941 Rubrobacter xylanophilus DSM 9941 (rubrXyla_DSM9941)
|
||||
15746 Prochlorococcus marinus str. MIT 9301 (15746)
|
||||
15747 Rhodopseudomonas palustris HaA2 (15747)
|
||||
18981 Finegoldia magna ATCC 29328 (18981)
|
||||
franCcI3 Frankia sp. CcI3 (franCcI3)
|
||||
15749 Rhodopseudomonas palustris BisB5 (15749)
|
||||
16549 Janthinobacterium sp. Marseille (16549)
|
||||
89 Mycobacterium bovis AF2122/97 (89)
|
||||
12716 Citrobacter koseri ATCC BAA-895 (12716)
|
||||
82 Lactobacillus acidophilus NCFM (82)
|
||||
81 Clostridium tetani E88 (81)
|
||||
16095 Mycoplasma agalactiae PG2 (16095)
|
||||
87 Corynebacterium diphtheriae NCTC 13129 (87)
|
||||
84 Lactobacillus gasseri ATCC 33323 (84)
|
||||
85 Listeria monocytogenes str. 4b F2365 (85)
|
||||
20197 Francisella tularensis subsp. holarctica FTA (20197)
|
||||
caldSacc_DSM8903 Caldicellulosiruptor saccharolyticus DSM 8903 (caldSacc_DSM8903)
|
||||
anabVari_ATCC29413 Anabaena variabilis ATCC 29413 (anabVari_ATCC29413)
|
||||
lactPlan Lactobacillus plantarum WCFS1 (lactPlan)
|
||||
carbHydr_Z_2901 Carboxydothermus hydrogenoformans Z-2901 (carbHydr_Z_2901)
|
||||
13617 Prochlorococcus marinus str. MIT 9515 (13617)
|
||||
10878 Bacillus anthracis str. Sterne (10878)
|
||||
16067 Yersinia pestis Angola (16067)
|
||||
16062 Leuconostoc citreum KM20 (16062)
|
||||
16148 Leptospira borgpetersenii serovar Hardjo-bovis JB197 (16148)
|
||||
16146 Leptospira borgpetersenii serovar Hardjo-bovis L550 (16146)
|
||||
10877 Bacillus thuringiensis serovar konkukian str. 97-27 (10877)
|
||||
19517 Clostridium botulinum A str. ATCC 19397 (19517)
|
||||
nitrWino_NB_255 Nitrobacter winogradskyi Nb-255 (nitrWino_NB_255)
|
||||
16321 Bifidobacterium adolescentis ATCC 15703 (16321)
|
||||
17629 Pseudomonas putida GB-1 (17629)
|
||||
17237 Rickettsia bellii OSU 85-389 (17237)
|
||||
19519 Clostridium botulinum F str. Langeland (19519)
|
||||
mesoLoti Mesorhizobium loti MAFF303099 (mesoLoti)
|
||||
coxiBurn Coxiella burnetii RSA 493 (coxiBurn)
|
||||
247 Chlamydophila pneumoniae AR39 (247)
|
||||
acidBact_ELLIN345 Acidobacteria bacterium Ellin345 (acidBact_ELLIN345)
|
||||
241 Salmonella typhimurium LT2 (241)
|
||||
16249 Bartonella bacilliformis KC583 (16249)
|
||||
12997 Acaryochloris marina MBIC11017 (12997)
|
||||
xyleFast Xylella fastidiosa 9a5c (xyleFast)
|
||||
13435 Lactobacillus sakei subsp. sakei 23K (13435)
|
||||
11752 Haemophilus influenzae 86-028NP (11752)
|
||||
16393 Neisseria meningitidis 053442 (16393)
|
||||
16394 Thermoanaerobacter sp. X514 (16394)
|
||||
methKand1 Methanopyrus kandleri AV19 (methKand1)
|
||||
bifiLong Bifidobacterium longum NCC2705 (bifiLong)
|
||||
leptInte Leptospira interrogans serovar Lai str. 56601 (leptInte)
|
||||
burkCeno_HI2424 Burkholderia cenocepacia HI2424 (burkCeno_HI2424)
|
||||
16364 Streptococcus pyogenes MGAS10270 (16364)
|
||||
13875 Candidatus Blochmannia pennsylvanicus str. BPEN (13875)
|
||||
buchSp Buchnera aphidicola str. APS (Acyrthosiphon pisum) (buchSp)
|
||||
178 Burkholderia pseudomallei K96243 (178)
|
||||
176 Mycoplasma penetrans HF-2 (176)
|
||||
pyroCali1 Pyrobaculum calidifontis JCM 11548 (pyroCali1)
|
||||
chloTepi_TLS Chlorobium tepidum TLS (chloTepi_TLS)
|
||||
13282 Synechococcus elongatus PCC 6301 (13282)
|
||||
16800 Pseudomonas entomophila L48 (16800)
|
||||
picrTorr1 Picrophilus torridus DSM 9790 (picrTorr1)
|
||||
shewANA3 Shewanella sp. ANA-3 (shewANA3)
|
||||
13443 Listeria welshimeri serovar 6b str. SLCC5334 (13443)
|
||||
bdelBact Bdellovibrio bacteriovorus HD100 (bdelBact)
|
||||
gramFors_KT0803 Gramella forsetii KT0803 (gramFors_KT0803)
|
||||
184 Clavibacter michiganensis subsp. sepedonicus (184)
|
||||
189 Streptomyces avermitilis MA-4680 (189)
|
||||
clavMich_NCPPB_382 Clavibacter michiganensis subsp. michiganensis NCPPB 382 (clavMich_NCPPB_382)
|
||||
peloCarb Pelobacter carbinolicus DSM 2380 (peloCarb)
|
||||
20083 Campylobacter hominis ATCC BAA-381 (20083)
|
||||
saliTrop_CNB_440 Salinispora tropica CNB-440 (saliTrop_CNB_440)
|
||||
17057 Borrelia afzelii PKo (17057)
|
||||
campJeju Campylobacter jejuni subsp. jejuni NCTC 11168 (campJeju)
|
||||
17053 Pseudomonas putida W619 (17053)
|
||||
12 Pseudomonas fluorescens PfO-1 (12)
|
||||
15 Xanthomonas campestris pv. campestris str. 8004 (15)
|
||||
12475 Wolbachia endosymbiont strain TRS of Brugia malayi (12475)
|
||||
13217 Azoarcus sp. BH72 (13217)
|
||||
dehaEthe_195 Dehalococcoides ethenogenes 195 (dehaEthe_195)
|
||||
methTherPT1 Methanosaeta thermophila PT (methTherPT1)
|
||||
shewMR7 Shewanella sp. MR-7 (shewMR7)
|
||||
shewMR4 Shewanella sp. MR-4 (shewMR4)
|
||||
15708 Acidovorax avenae subsp. citrulli AAC00-1 (15708)
|
||||
19087 Ureaplasma parvum serovar 3 str. ATCC 27815 (19087)
|
||||
geobUran_RF4 Geobacter uraniireducens Rf4 (geobUran_RF4)
|
||||
shewDeni Shewanella denitrificans OS217 (shewDeni)
|
||||
pyrFur2 Pyrococcus furiosus DSM 3638 (pyrFur2)
|
||||
desuRedu_MI_1 Desulfotomaculum reducens MI-1 (desuRedu_MI_1)
|
||||
syntFuma_MPOB Syntrophobacter fumaroxidans MPOB (syntFuma_MPOB)
|
||||
278 Streptococcus pneumoniae R6 (278)
|
||||
13654 Synechococcus sp. RCC307 (13654)
|
||||
13655 Synechococcus sp. CC9902 (13655)
|
||||
16313 Staphylococcus aureus subsp. aureus USA300 (16313)
|
||||
legiPneu_PHILADELPHIA Legionella pneumophila subsp. pneumophila str. Philadelphia 1 (legiPneu_PHILADELPHIA)
|
||||
20391 Bacillus pumilus SAFR-032 (20391)
|
||||
chlaPneu_CWL029 Chlamydophila pneumoniae CWL029 (chlaPneu_CWL029)
|
||||
16259 Escherichia coli UTI89 (16259)
|
||||
13067 Bacteroides fragilis YCH46 (13067)
|
||||
gloeViol Gloeobacter violaceus PCC 7421 (gloeViol)
|
||||
moorTher_ATCC39073 Moorella thermoacetica ATCC 39073 (moorTher_ATCC39073)
|
||||
323 Pseudomonas syringae pv. syringae B728a (323)
|
||||
320 Brucella suis 1330 (320)
|
||||
roseDeni_OCH_114 Roseobacter denitrificans OCh 114 (roseDeni_OCH_114)
|
||||
326 Streptococcus agalactiae A909 (326)
|
||||
327 Pseudomonas fluorescens Pf-5 (327)
|
||||
325 Ehrlichia chaffeensis str. Arkansas (325)
|
||||
329 Desulfovibrio desulfuricans G20 (329)
|
||||
16203 Brucella melitensis biovar Abortus 2308 (16203)
|
||||
12950 Yersinia pseudotuberculosis IP 32953 (12950)
|
||||
heliPylo_26695 Helicobacter pylori 26695 (heliPylo_26695)
|
||||
12952 Rickettsia canadensis str. McKiel (12952)
|
||||
12953 Rickettsia akari str. Hartford (12953)
|
||||
16208 Mycoplasma capricolum subsp. capricolum ATCC 27343 (16208)
|
||||
17375 Francisella tularensis subsp. tularensis FSC198 (17375)
|
||||
19259 Acholeplasma laidlawii PG-8A (19259)
|
||||
77 Clostridium acetobutylicum ATCC 824 (77)
|
||||
74 Bacillus cereus ATCC 10987 (74)
|
||||
15770 Dehalococcoides sp. BAV1 (15770)
|
||||
79 Clostridium perfringens str. 13 (79)
|
||||
78 Clostridium difficile 630 (78)
|
||||
13624 Bacillus cereus subsp. cytotoxis NVH 391-98 (13624)
|
||||
13623 Bacillus weihenstephanensis KBAB4 (13623)
|
||||
tricEryt_IMS101 Trichodesmium erythraeum IMS101 (tricEryt_IMS101)
|
||||
photLumi Photorhabdus luminescens subsp. laumondii TTO1 (photLumi)
|
||||
peloTher_SI Pelotomaculum thermopropionicum SI (peloTher_SI)
|
||||
18789 Shewanella sediminis HAW-EB3 (18789)
|
||||
therKoda1 Thermococcus kodakarensis KOD1 (therKoda1)
|
||||
oceaIhey Oceanobacillus iheyensis HTE831 (oceaIhey)
|
||||
16297 Xanthomonas oryzae pv. oryzae MAFF 311018 (16297)
|
||||
19639 Methanococcus maripaludis C6 (19639)
|
||||
blocFlor Candidatus Blochmannia floridanus (blocFlor)
|
||||
shewW318 Shewanella sp. W3-18-1 (shewW318)
|
||||
16184 Clostridium phytofermentans ISDg (16184)
|
||||
17477 Acinetobacter baumannii ATCC 17978 (17477)
|
||||
therElon Thermosynechococcus elongatus BP-1 (therElon)
|
||||
13403 Bacillus amyloliquefaciens FZB42 (13403)
|
||||
17679 Petrotoga mobilis SJ95 (17679)
|
||||
16374 Streptococcus pneumoniae D39 (16374)
|
||||
16375 Shigella flexneri 5 str. 8401 (16375)
|
||||
methBoon1 Candidatus Methanoregula boonei 6A8 (methBoon1)
|
||||
mariMari_MCS10 Maricaulis maris MCS10 (mariMari_MCS10)
|
||||
ralsEutr_JMP134 Ralstonia eutropha JMP134 (ralsEutr_JMP134)
|
||||
baciSubt Bacillus subtilis subsp. subtilis str. 168 (baciSubt)
|
||||
16372 Buchnera aphidicola str. Cc (Cinara cedri) (16372)
|
||||
213 Prochlorococcus marinus subsp. pastoris str. CCMP1986 (213)
|
||||
erytLito_HTCC2594 Erythrobacter litoralis HTCC2594 (erytLito_HTCC2594)
|
||||
acidCell_11B Acidothermus cellulolyticus 11B (acidCell_11B)
|
||||
pyrAer1 Pyrobaculum aerophilum str. IM2 (pyrAer1)
|
||||
xantCamp Xanthomonas campestris pv. campestris str. ATCC 33913 (xantCamp)
|
||||
thioDeni_ATCC25259 Thiobacillus denitrificans ATCC 25259 (thioDeni_ATCC25259)
|
||||
28583 Chlamydia trachomatis 434/Bu (28583)
|
||||
deinRadi Deinococcus radiodurans R1 (deinRadi)
|
||||
yersPest_CO92 Yersinia pestis CO92 (yersPest_CO92)
|
||||
28585 Chlamydia trachomatis L2b/UCH-1/proctitis (28585)
|
||||
wolbEndo_OF_DROSOPHIL Wolbachia endosymbiont of Drosophila melanogaster (wolbEndo_OF_DROSOPHIL)
|
||||
17153 Streptococcus suis 05ZYH33 (17153)
|
||||
10689 Kineococcus radiotolerans SRS30216 (10689)
|
||||
17155 Streptococcus suis 98HAH33 (17155)
|
||||
17159 Campylobacter concisus 13826 (17159)
|
||||
ralsSola Ralstonia solanacearum GMI1000 (ralsSola)
|
||||
10687 Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 (10687)
|
||||
17403 Frankia alni ACN14a (17403)
|
||||
16871 Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 (16871)
|
||||
12388 Bacillus licheniformis ATCC 14580 (12388)
|
||||
neisMeni_Z2491_1 Neisseria meningitidis Z2491 (neisMeni_Z2491_1)
|
||||
saliRube_DSM13855 Salinibacter ruber DSM 13855 (saliRube_DSM13855)
|
||||
17953 Campylobacter jejuni subsp. jejuni 81116 (17953)
|
||||
10616 Mycoplasma mycoides subsp. mycoides SC str. PG1 (10616)
|
||||
13496 Prochlorococcus marinus str. MIT 9303 (13496)
|
||||
28507 Clostridium botulinum A3 str. Loch Maree (28507)
|
||||
colwPsyc_34H Colwellia psychrerythraea 34H (colwPsyc_34H)
|
||||
hyphNept_ATCC15444 Hyphomonas neptunium ATCC 15444 (hyphNept_ATCC15444)
|
||||
deinGeot_DSM11300 Deinococcus geothermalis DSM 11300 (deinGeot_DSM11300)
|
||||
312 Buchnera aphidicola str. Sg (Schizaphis graminum) (312)
|
||||
311 Streptococcus pyogenes MGAS315 (311)
|
||||
metaSedu Metallosphaera sedula DSM 5348 (metaSedu)
|
||||
314 Clostridium thermocellum ATCC 27405 (314)
|
||||
lactSali_UCC118 Lactobacillus salivarius UCC118 (lactSali_UCC118)
|
||||
pediPent_ATCC25745 Pediococcus pentosaceus ATCC 25745 (pediPent_ATCC25745)
|
||||
flavJohn_UW101 Flavobacterium johnsoniae UW101 (flavJohn_UW101)
|
||||
mannSucc_MBEL55E Mannheimia succiniciproducens MBEL55E (mannSucc_MBEL55E)
|
||||
haemSomn_129PT Haemophilus somnus 129PT (haemSomn_129PT)
|
||||
13145 Shigella dysenteriae Sd197 (13145)
|
||||
13146 Shigella boydii Sb227 (13146)
|
||||
17491 Legionella pneumophila str. Corby (17491)
|
||||
nanEqu1 Nanoarchaeum equitans Kin4-M (nanEqu1)
|
||||
12508 Staphylococcus haemolyticus JCSC1435 (12508)
|
||||
13384 Pelobacter propionicus DSM 2379 (13384)
|
||||
chlaTrac Chlamydia trachomatis D/UW-3/CX (chlaTrac)
|
||||
haloWals1 Haloquadratum walsbyi DSM 16790 (haloWals1)
|
||||
13389 Shewanella baltica OS195 (13389)
|
||||
baciHalo Bacillus halodurans C-125 (baciHalo)
|
||||
hypeButy1 Hyperthermus butylicus DSM 5456 (hypeButy1)
|
||||
chroViol Chromobacterium violaceum ATCC 12472 (chroViol)
|
||||
16088 Francisella tularensis subsp. novicida U112 (16088)
|
||||
methJann1 Methanocaldococcus jannaschii DSM 2661 (methJann1)
|
||||
384 Bacillus cereus ATCC 14579 (384)
|
||||
pastMult Pasteurella multocida subsp. multocida str. Pm70 (pastMult)
|
||||
386 Pseudomonas aeruginosa UCBPP-PA14 (386)
|
||||
388 Haemophilus somnus 2336 (388)
|
||||
16083 Alkaliphilus oremlandii OhILAs (16083)
|
||||
27853 Francisella philomiragia subsp. philomiragia ATCC 25017 (27853)
|
||||
16081 Mycobacterium sp. KMS (16081)
|
||||
cytoHutc_ATCC33406 Cytophaga hutchinsonii ATCC 33406 (cytoHutc_ATCC33406)
|
||||
nitrEuro Nitrosomonas europaea ATCC 19718 (nitrEuro)
|
||||
12720 Enterobacter sakazakii ATCC BAA-894 (12720)
|
||||
therMari Thermotoga maritima MSB8 (therMari)
|
||||
mycoGeni Mycoplasma genitalium G37 (mycoGeni)
|
||||
pyroIsla1 Pyrobaculum islandicum DSM 4184 (pyroIsla1)
|
||||
17407 Burkholderia multivorans ATCC 17616 (17407)
|
||||
13030 Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- (13030)
|
||||
18271 Rickettsia massiliae MTU5 (18271)
|
||||
21047 Candidatus Desulforudis audaxviator MP104C (21047)
|
||||
19857 Vibrio harveyi ATCC BAA-1116 (19857)
|
||||
17639 Parvibaculum lavamentivorans DS-1 (17639)
|
||||
18059 Mycobacterium bovis BCG str. Pasteur 1173P2 (18059)
|
||||
259 Escherichia coli O157:H7 EDL933 (259)
|
||||
64 Staphylococcus epidermidis RP62A (64)
|
||||
neisGono_FA1090_1 Neisseria gonorrhoeae FA 1090 (neisGono_FA1090_1)
|
||||
66 Streptococcus gordonii str. Challis substr. CH1 (66)
|
||||
16723 Aeromonas salmonicida subsp. salmonicida A449 (16723)
|
||||
16230 Mycobacterium ulcerans Agy99 (16230)
|
||||
16721 Coxiella burnetii Dugway 5J108-111 (16721)
|
||||
16720 Pseudomonas aeruginosa PA7 (16720)
|
||||
256 Buchnera aphidicola str. Bp (Baizongia pistaciae) (256)
|
||||
257 Chlamydophila pneumoniae J138 (257)
|
||||
novoArom_DSM12444 Novosphingobium aromaticivorans DSM 12444 (novoArom_DSM12444)
|
||||
15642 Mycobacterium tuberculosis F11 (15642)
|
||||
azoaSp_EBN1 Azoarcus sp. EbN1 (azoaSp_EBN1)
|
||||
therTher_HB27 Thermus thermophilus HB27 (therTher_HB27)
|
||||
metAce1 Methanosarcina acetivorans C2A (metAce1)
|
||||
glucOxyd_621H Gluconobacter oxydans 621H (glucOxyd_621H)
|
||||
listInno Listeria innocua Clip11262 (listInno)
|
||||
sulfAcid1 Sulfolobus acidocaldarius DSM 639 (sulfAcid1)
|
||||
geobTher_NG80_2 Geobacillus thermodenitrificans NG80-2 (geobTher_NG80_2)
|
||||
402 Lactobacillus casei ATCC 334 (402)
|
||||
13960 Escherichia coli E24377A (13960)
|
||||
13954 Burkholderia pseudomallei 1710b (13954)
|
||||
17445 Marinomonas sp. MWYL1 (17445)
|
||||
13967 Corynebacterium jeikeium K411 (13967)
|
||||
leifXyli_XYLI_CTCB0 Leifsonia xyli subsp. xyli str. CTCB07 (leifXyli_XYLI_CTCB0)
|
||||
10645 Synechococcus elongatus PCC 7942 (10645)
|
||||
campFetu_82_40 Campylobacter fetus subsp. fetus 82-40 (campFetu_82_40)
|
||||
13355 Ehrlichia ruminantium str. Welgevonden (13355)
|
||||
desuHafn_Y51 Desulfitobacterium hafniense Y51 (desuHafn_Y51)
|
||||
13356 Ehrlichia ruminantium str. Gardel (13356)
|
||||
13291 Bacillus clausii KSM-K16 (13291)
|
||||
16421 Francisella tularensis subsp. holarctica (16421)
|
||||
therVolc1 Thermoplasma volcanium GSS1 (therVolc1)
|
||||
soliUsit_ELLIN6076 Solibacter usitatus Ellin6076 (soliUsit_ELLIN6076)
|
||||
bradJapo Bradyrhizobium japonicum USDA 110 (bradJapo)
|
||||
methTher1 Methanothermobacter thermautotrophicus str. Delta H (methTher1)
|
||||
13454 Pseudoalteromonas atlantica T6c (13454)
|
||||
methAeol1 Methanococcus aeolicus Nankai-3 (methAeol1)
|
||||
nostSp Nostoc sp. PCC 7120 (nostSp)
|
||||
sphiAlas_RB2256 Sphingopyxis alaskensis RB2256 (sphiAlas_RB2256)
|
||||
saccDegr_2_40 Saccharophagus degradans 2-40 (saccDegr_2_40)
|
||||
408 Shigella flexneri 2a str. 2457T (408)
|
||||
anaeDeha_2CP_C Anaeromyxobacter dehalogenans 2CP-C (anaeDeha_2CP_C)
|
||||
bordBron Bordetella bronchiseptica RB50 (bordBron)
|
||||
rickBell_RML369_C Rickettsia bellii RML369-C (rickBell_RML369_C)
|
||||
pyroArse1 Pyrobaculum arsenaticum DSM 13514 (pyroArse1)
|
||||
thioDeni_ATCC33889 Sulfurimonas denitrificans DSM 1251 (thioDeni_ATCC33889)
|
||||
methSmit1 Methanobrevibacter smithii ATCC 35061 (methSmit1)
|
||||
halMar1 Haloarcula marismortui ATCC 43049 (halMar1)
|
||||
9618 Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 (9618)
|
||||
9619 Brucella abortus biovar 1 str. 9-941 (9619)
|
||||
vermEise_EF01_2 Verminephrobacter eiseniae EF01-2 (vermEise_EF01_2)
|
||||
granBeth_CGDNIH1 Granulibacter bethesdensis CGDNIH1 (granBeth_CGDNIH1)
|
||||
alcaBork_SK2 Alcanivorax borkumensis SK2 (alcaBork_SK2)
|
||||
nitrOcea_ATCC19707 Nitrosococcus oceani ATCC 19707 (nitrOcea_ATCC19707)
|
||||
campJeju_RM1221 Campylobacter jejuni RM1221 (campJeju_RM1221)
|
||||
12468 Bacillus cereus E33L (12468)
|
||||
12469 Streptococcus pyogenes MGAS10394 (12469)
|
||||
19135 Actinobacillus pleuropneumoniae serovar 3 str. JL03 (19135)
|
||||
woliSucc Wolinella succinogenes DSM 1740 (woliSucc)
|
||||
19485 Ochrobactrum anthropi ATCC 49188 (19485)
|
||||
therPend1 Thermofilum pendens Hrk 5 (therPend1)
|
||||
19489 Staphylococcus aureus subsp. aureus USA300_TCH1516 (19489)
|
||||
therFusc_YX Thermobifida fusca YX (therFusc_YX)
|
||||
12609 Chlorobium phaeobacteroides DSM 266 (12609)
|
||||
aquiAeol Aquifex aeolicus VF5 (aquiAeol)
|
||||
heliPylo_J99 Helicobacter pylori J99 (heliPylo_J99)
|
||||
burkPseu_1106A Burkholderia pseudomallei 1106a (burkPseu_1106A)
|
||||
azorCaul2 Azorhizobium caulinodans ORS 571 (azorCaul2)
|
||||
12607 Prosthecochloris vibrioformis DSM 265 (12607)
|
||||
synePCC6 Synechocystis sp. PCC 6803 (synePCC6)
|
||||
baumCica_HOMALODISCA Baumannia cicadellinicola str. Hc (Homalodisca coagulata) (baumCica_HOMALODISCA)
|
||||
355 Chlamydophila abortus S26/3 (355)
|
||||
28111 Sorangium cellulosum 'So ce 56' (28111)
|
||||
shewBalt Shewanella baltica OS155 (shewBalt)
|
||||
therTeng Thermoanaerobacter tengcongensis MB4 (therTeng)
|
||||
359 Pseudomonas syringae pv. tomato str. DC3000 (359)
|
||||
19943 Rickettsia rickettsii str. Iowa (19943)
|
||||
alkaEhrl_MLHE_1 Alkalilimnicola ehrlichei MLHE-1 (alkaEhrl_MLHE_1)
|
||||
sulSol1 Sulfolobus solfataricus P2 (sulSol1)
|
||||
15604 Dehalococcoides sp. CBDB1 (15604)
|
||||
19265 Nitrosopumilus maritimus SCM1 (19265)
|
||||
19543 Thermotoga sp. RQ2 (19543)
|
||||
methHung1 Methanospirillum hungatei JF-1 (methHung1)
|
||||
27803 Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 (27803)
|
||||
28505 Clostridium botulinum B1 str. Okra (28505)
|
||||
15766 Lactobacillus reuteri F275 (15766)
|
||||
17929 Burkholderia cenocepacia MC0-3 (17929)
|
||||
15762 Mycobacterium sp. MCS (15762)
|
||||
15760 Mycobacterium gilvum PYR-GCK (15760)
|
||||
15761 Mycobacterium vanbaalenii PYR-1 (15761)
|
||||
18797 Lactococcus lactis subsp. cremoris MG1363 (18797)
|
||||
20371 Brucella suis ATCC 23445 (20371)
|
||||
desuVulg_HILDENBOROUG Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough (desuVulg_HILDENBOROUG)
|
||||
20079 Escherichia coli DH10B (20079)
|
||||
288 Yersinia pestis KIM (288)
|
||||
13006 Alkaliphilus metalliredigens QYMF (13006)
|
||||
13001 Acinetobacter baumannii (13001)
|
||||
4 Treponema denticola ATCC 35405 (4)
|
||||
283 Agrobacterium tumefaciens str. C58 (283)
|
||||
methVann1 Methanococcus vannielii SB (methVann1)
|
||||
285 Xylella fastidiosa Temecula1 (285)
|
||||
286 Streptococcus pyogenes MGAS8232 (286)
|
||||
candCars_RUDDII Candidatus Carsonella ruddii PV (candCars_RUDDII)
|
||||
336 Anaplasma phagocytophilum HZ (336)
|
||||
burkMall_ATCC23344 Burkholderia mallei ATCC 23344 (burkMall_ATCC23344)
|
||||
leucMese_ATCC8293 Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 (leucMese_ATCC8293)
|
||||
burkViet_G4 Burkholderia vietnamiensis G4 (burkViet_G4)
|
||||
267 Pseudomonas putida KT2440 (267)
|
||||
266 Staphylococcus aureus subsp. aureus MSSA476 (266)
|
||||
265 Staphylococcus aureus subsp. aureus MRSA252 (265)
|
||||
264 Staphylococcus aureus subsp. aureus N315 (264)
|
||||
17643 Shewanella baltica OS185 (17643)
|
||||
archFulg1 Archaeoglobus fulgidus DSM 4304 (archFulg1)
|
||||
13418 Polaromonas naphthalenivorans CJ2 (13418)
|
||||
18007 Desulfococcus oleovorans Hxd3 (18007)
|
||||
16304 Sinorhizobium medicae WSM419 (16304)
|
||||
16306 Caulobacter sp. K31 (16306)
|
||||
59 Chloroflexus aurantiacus J-10-fl (59)
|
||||
12530 Synechococcus sp. CC9311 (12530)
|
||||
13551 Prochlorococcus marinus str. MIT 9211 (13551)
|
||||
15691 Mycobacterium abscessus (15691)
|
||||
fusoNucl Fusobacterium nucleatum subsp. nucleatum ATCC 25586 (fusoNucl)
|
||||
63 Staphylococcus aureus RF122 (63)
|
||||
heliHepa Helicobacter hepaticus ATCC 51449 (heliHepa)
|
||||
17249 Thermosipho melanesiensis BI429 (17249)
|
||||
15596 Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 (15596)
|
||||
psycIngr_37 Psychromonas ingrahamii 37 (psycIngr_37)
|
||||
syntAcid_SB Syntrophus aciditrophicus SB (syntAcid_SB)
|
||||
salmTyph Salmonella enterica subsp. enterica serovar Typhi str. CT18 (salmTyph)
|
||||
burkXeno_LB400 Burkholderia xenovorans LB400 (burkXeno_LB400)
|
||||
trepPall Treponema pallidum subsp. pallidum str. Nichols (trepPall)
|
||||
neisMeni_MC58_1 Neisseria meningitidis MC58 (neisMeni_MC58_1)
|
||||
syntWolf_GOETTINGEN Syntrophomonas wolfei subsp. wolfei str. Goettingen (syntWolf_GOETTINGEN)
|
||||
15644 Thermotoga lettingae TMO (15644)
|
||||
13913 Nitrosomonas eutropha C91 (13913)
|
||||
17417 Dinoroseobacter shibae DFL 12 (17417)
|
||||
13911 Prochlorococcus marinus str. NATL2A (13911)
|
||||
13910 Prochlorococcus marinus str. MIT 9312 (13910)
|
||||
250 Ralstonia metallidurans CH34 (250)
|
||||
13915 Frankia sp. EAN1pec (13915)
|
||||
13914 Ignicoccus hospitalis KIN4/I (13914)
|
||||
rhodSpha_2_4_1 Rhodobacter sphaeroides 2.4.1 (rhodSpha_2_4_1)
|
||||
16235 Escherichia coli 536 (16235)
|
||||
zymoMobi_ZM4 Zymomonas mobilis subsp. mobilis ZM4 (zymoMobi_ZM4)
|
||||
rhodPalu_CGA009 Rhodopseudomonas palustris CGA009 (rhodPalu_CGA009)
|
||||
420 Chlamydophila pneumoniae TW-183 (420)
|
||||
stapMari1 Staphylothermus marinus F1 (stapMari1)
|
||||
sinoMeli Sinorhizobium meliloti 1021 (sinoMeli)
|
||||
bartHens_HOUSTON_1 Bartonella henselae str. Houston-1 (bartHens_HOUSTON_1)
|
||||
301 Streptococcus pyogenes SSI-1 (301)
|
||||
19193 Corynebacterium glutamicum R (19193)
|
||||
304 Clostridium perfringens ATCC 13124 (304)
|
||||
306 Staphylococcus aureus subsp. aureus MW2 (306)
|
||||
307 Corynebacterium glutamicum ATCC 13032 (307)
|
||||
caulCres Caulobacter crescentus CB15 (caulCres)
|
||||
haheChej_KCTC_2396 Hahella chejuensis KCTC 2396 (haheChej_KCTC_2396)
|
||||
10784 Bacillus anthracis str. 'Ames Ancestor' (10784)
|
||||
magnMC1 Magnetococcus sp. MC-1 (magnMC1)
|
||||
heliPylo_HPAG1 Helicobacter pylori HPAG1 (heliPylo_HPAG1)
|
||||
pyrHor1 Pyrococcus horikoshii OT3 (pyrHor1)
|
||||
12514 Brucella ovis ATCC 25840 (12514)
|
||||
12512 Arthrobacter aurescens TC1 (12512)
|
||||
actiPleu_L20 Actinobacillus pleuropneumoniae L20 (actiPleu_L20)
|
||||
paraDeni_PD1222 Paracoccus denitrificans PD1222 (paraDeni_PD1222)
|
||||
borrBurg Borrelia burgdorferi B31 (borrBurg)
|
||||
strePyog_M1_GAS Streptococcus pyogenes M1 GAS (strePyog_M1_GAS)
|
||||
pseuAeru Pseudomonas aeruginosa PAO1 (pseuAeru)
|
||||
16523 Herpetosiphon aurantiacus ATCC 23779 (16523)
|
||||
16525 Candidatus Korarchaeum cryptofilum OPF8 (16525)
|
||||
19619 Lysinibacillus sphaericus C3-41 (19619)
|
||||
19617 Candidatus Sulcia muelleri GWSS (19617)
|
||||
saccEryt_NRRL_2338 Saccharopolyspora erythraea NRRL 2338 (saccEryt_NRRL_2338)
|
||||
methCaps_BATH Methylococcus capsulatus str. Bath (methCaps_BATH)
|
||||
16645 Yersinia pestis Antiqua (16645)
|
||||
16646 Yersinia pestis Nepal516 (16646)
|
||||
12637 Clostridium beijerinckii NCIMB 8052 (12637)
|
||||
ehrlRumi_WELGEVONDEN Ehrlichia ruminantium str. Welgevonden (ehrlRumi_WELGEVONDEN)
|
||||
methLabrZ_1 Methanocorpusculum labreanum Z (methLabrZ_1)
|
||||
13773 Streptococcus thermophilus LMD-9 (13773)
|
||||
20039 Leptothrix cholodnii SP-6 (20039)
|
||||
shewAmaz Shewanella amazonensis SB2B (shewAmaz)
|
||||
13126 Legionella pneumophila str. Lens (13126)
|
||||
13127 Legionella pneumophila str. Paris (13127)
|
||||
13120 Mycoplasma hyopneumoniae 232 (13120)
|
||||
18509 Staphylococcus aureus subsp. aureus Mu3 (18509)
|
||||
13040 Silicibacter sp. TM1040 (13040)
|
||||
18267 Candidatus Vesicomyosocius okutanii HA (18267)
|
||||
methFlag_KT Methylobacillus flagellatus KT (methFlag_KT)
|
||||
therAcid1 Thermoplasma acidophilum DSM 1728 (therAcid1)
|
||||
therPetr_RKU_1 Thermotoga petrophila RKU-1 (therPetr_RKU_1)
|
||||
shewFrig Shewanella frigidimarina NCIMB 400 (shewFrig)
|
||||
photProf_SS9 Photobacterium profundum SS9 (photProf_SS9)
|
||||
burkThai_E264 Burkholderia thailandensis E264 (burkThai_E264)
|
||||
17811 Lactobacillus helveticus DPC 4571 (17811)
|
||||
229 Chlamydia muridarum Nigg (229)
|
||||
228 Chlamydophila caviae GPIC (228)
|
||||
nitrMult_ATCC25196 Nitrosospira multiformis ATCC 25196 (nitrMult_ATCC25196)
|
||||
223 Mycobacterium tuberculosis CDC1551 (223)
|
||||
220 Prochlorococcus marinus str. MIT 9313 (220)
|
||||
20241 Shewanella halifaxensis HAW-EB4 (20241)
|
||||
20243 Brucella canis ATCC 23365 (20243)
|
||||
88 Mycobacterium avium 104 (88)
|
||||
19227 Renibacterium salmoninarum ATCC 33209 (19227)
|
||||
neisMeni_FAM18_1 Neisseria meningitidis FAM18 (neisMeni_FAM18_1)
|
||||
arthFB24 Arthrobacter sp. FB24 (arthFB24)
|
||||
10679 Rickettsia typhi str. Wilmington (10679)
|
||||
17457 Pseudomonas mendocina ymp (17457)
|
||||
13959 Escherichia coli HS (13959)
|
||||
17455 Shewanella woodyi ATCC 51908 (17455)
|
||||
17109 Salinispora arenicola CNS-205 (17109)
|
||||
17459 Serratia proteamaculans 568 (17459)
|
||||
13953 Burkholderia pseudomallei 668 (13953)
|
||||
10676 Mycoplasma synoviae 53 (10676)
|
||||
10675 Mycoplasma hyopneumoniae J (10675)
|
||||
16820 Clostridium novyi NT (16820)
|
||||
nocaFarc_IFM10152 Nocardia farcinica IFM 10152 (nocaFarc_IFM10152)
|
||||
13378 Bacteroides vulgatus ATCC 8482 (13378)
|
||||
16351 Escherichia coli W3110 (16351)
|
||||
porpGing_W83 Porphyromonas gingivalis W83 (porpGing_W83)
|
||||
17415 Shewanella pealeana ATCC 700345 (17415)
|
||||
eschColi_APEC_O1 Escherichia coli APEC O1 (eschColi_APEC_O1)
|
||||
46 Bacteroides fragilis NCTC 9343 (46)
|
||||
13462 Roseiflexus castenholzii DSM 13941 (13462)
|
||||
44 Bartonella quintana str. Toulouse (44)
|
||||
42 Rickettsia conorii str. Malish 7 (42)
|
||||
43 Rickettsia prowazekii str. Madrid E (43)
|
||||
bactThet_VPI_5482 Bacteroides thetaiotaomicron VPI-5482 (bactThet_VPI_5482)
|
||||
17413 Delftia acidovorans SPH-1 (17413)
|
||||
haemInfl_KW20 Haemophilus influenzae Rd KW20 (haemInfl_KW20)
|
||||
brucMeli Brucella melitensis 16M (brucMeli)
|
||||
haloHalo_SL1 Halorhodospira halophila SL1 (haloHalo_SL1)
|
||||
pyrAby1 Pyrococcus abyssi GE5 (pyrAby1)
|
||||
mculMari1 Methanoculleus marisnigri JR1 (mculMari1)
|
||||
12554 Borrelia garinii PBi (12554)
|
||||
dechArom_RCB Dechloromonas aromatica RCB (dechArom_RCB)
|
||||
stapAure_MU50 Staphylococcus aureus subsp. aureus Mu50 (stapAure_MU50)
|
||||
eschColi_K12 Escherichia coli K12 (eschColi_K12)
|
||||
12416 Pseudomonas syringae pv. phaseolicola 1448A (12416)
|
||||
aeroHydr_ATCC7966 Aeromonas hydrophila subsp. hydrophila ATCC 7966 (aeroHydr_ATCC7966)
|
||||
baciAnth_AMES Bacillus anthracis str. Ames (baciAnth_AMES)
|
||||
shewOnei Shewanella oneidensis MR-1 (shewOnei)
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
#Harvested from http://genome.ucsc.edu/cgi-bin/das/dsn
|
||||
main http://genome.ucsc.edu/cgi-bin/hgTracks? danRer4,mm8,mm5,mm7,mm6,panTro1,galGal2,ce1,rn3,rn2,droMoj2,droEre1,droYak1,droYak2,dp3,dp2,dm1,canFam1,canFam2,danRer3,danRer2,ci2,ci1,tetNig1,bosTau1,bosTau2,droAna1,droAna2,rheMac2,rheMac1,sacCer1,droPer1,hg18,cb1,droMoj1,droSec1,strPur1,droVir2,droVir1,dm2,sc1,xenTro1,apiMel1,droGri1,droSim1,fr1,hg15,hg16,hg17,monDom1,apiMel2,anoGam1,ce2
|
||||
main http://genome.ucsc.edu/cgi-bin/hgTracks? priPac1,danRer4,mm9,mm8,droAna1,mm5,caeRem2,mm7,mm6,panTro1,dm3,panTro2,anoCar1,ce4,galGal3,galGal2,ce1,rn3,rn2,droMoj1,droMoj2,rn4,droYak1,droYak2,dp3,dp2,dm1,canFam1,danRer5,canFam2,danRer3,danRer2,ornAna1,ci2,ci1,tetNig1,bosTau1,bosTau3,bosTau2,equCab1,oryLat1,droAna2,droEre1,ponAbe2,rheMac2,sacCer1,droPer1,droSim1,monDom1,cb1,dm2,droSec1,strPur1,droVir2,droVir1,strPur2,sc1,xenTro1,droGri1,xenTro2,cb3,gasAcu1,caePb1,anoGam1,fr2,fr1,hg15,hg16,hg17,hg18,felCat3,apiMel2,monDom4,apiMel1,ce2
|
||||
#Harvested from http://archaea.ucsc.edu/cgi-bin/das/dsn
|
||||
archaea http://archaea.ucsc.edu/cgi-bin/hgTracks? haloVolc1,therMari1,sulSol1,vibrChol1,pyrFur2,campJeju1,halMar1,methHung1,vibrPara1,metAce1,campJeju_RM1221_1,methStad1,nanEqu1,vibrVuln_YJ016_1,ferrAcid1,heliPylo_J99_1,geobSulf1,eschColi_O157H7EDL933_1,vibrFisc_ES114_1,haloHalo1,picrTorr1,deinRadi1,pyrAer1,sulfToko1,sulfAcid1,therVolc1,eschColi_K12_1,eschColi_CFT073_1,vibrVuln_CMCP6_1,therTher_HB27_1,geobMeta_GS15_1,pyrAby1,therAcid1,baciSubt1,methBurt2,heliHepa1,methMaze1,therTher_HB8_1,methJann1,shewOnei1,heliPylo_26695_1,eschColi_O157H7_1,archFulg1,pyrHor1,methBark1,methTher1,metMar1,aerPer1,therKoda1,aquiAeol1,natrPhar1,methKand1
|
||||
archaea http://archaea.ucsc.edu/cgi-bin/hgTracks? alkaEhrl_MLHE_1,shewW318,idioLoih_L2TR,sulSol1,erwiCaro_ATROSEPTICA,symbTher_IAM14863,moorTher_ATCC39073,therFusc_YX,methHung1,bradJapo,therElon,shewPutrCN32,pediPent_ATCC25745,mariMari_MCS10,nanEqu1,baciSubt,chlaTrac,magnMagn_AMB_1,chroViol,ralsSola,acidCryp_JF_5,erytLito_HTCC2594,desuVulg_HILDENBOROUG,pyrAer1,sulfToko1,shewANA3,paraSp_UWE25,geobKaus_HTA426,rhizEtli_CFN_42,uncuMeth_RCI,candBloc_FLORIDANUS,deinRadi,yersPest_CO92,saccEryt_NRRL_2338,rhodRHA1,candCars_RUDDII,burkMall_ATCC23344,eschColi_O157H7,burk383,psycIngr_37,rhodSpha_2_4_1,wolbEndo_OF_DROSOPHIL,burkViet_G4,propAcne_KPA171202,enteFaec_V583,campJeju_81_176,acidJS42,heliPylo_26695,pseuHalo_TAC125,chroSale_DSM3043,methVann1,archFulg1,neisMeni_Z2491_1,fusoNucl,vermEise_EF01_2,anabVari_ATCC29413,tropWhip_TW08_27,heliHepa,acinSp_ADP1,anapMarg_ST_MARIES,natrPhar1,haheChej_KCTC_2396,therPetr_RKU_1,neisGono_FA1090_1,colwPsyc_34H,desuPsyc_LSV54,hyphNept_ATCC15444,vibrChol1,deinGeot_DSM11300,strePyog_M1_GAS,franCcI3,salmTyph,metaSedu,lactSali_UCC118,trepPall,neisMeni_MC58_1,syntWolf_GOETTINGEN,flavJohn_UW101,methBoon1,haemSomn_129PT,shewLoihPV4,igniHosp1,haemInfl_KW20,haloHalo_SL1,ferrAcid1,sphiAlas_RB2256,candPela_UBIQUE_HTCC1,caldSacc_DSM8903,aerPer1,lactPlan,carbHydr_Z_2901,therTher_HB8,vibrVuln_YJ016_1,rhodPalu_CGA009,acidCell_11B,siliPome_DSS_3,therVolc1,haloWals1,rubrXyla_DSM9941,shewAmaz,nocaJS61,vibrVuln_CMCP6_1,sinoMeli,ureaUrea,baciHalo,bartHens_HOUSTON_1,nitrWino_NB_255,hypeButy1,methBurt2,polaJS66,mesoLoti,methMari_C7,caulCres,neisMeni_FAM18_1,acidBact_ELLIN345,caldMaqu1,salmEnte_PARATYPI_ATC,glucOxyd_621H,cytoHutc_ATCC33406,nitrEuro,therMari,coxiBurn,woliSucc,heliPylo_HPAG1,mesoFlor_L1,pyrHor1,methAeol1,procMari_CCMP1375,pyroArse1,oenoOeni_PSU_1,alcaBork_SK2,wiggBrev,actiPleu_L20,lactLact,methJann1,paraDeni_PD1222,borrBurg,pyroIsla1,orieTsut_BORYONG,shewMR4,methKand1,methCaps_BATH,onioYell_PHYTOPLASMA,bordBron,cenaSymb1,burkCeno_HI2424,franTula_TULARENSIS,pyrFur2,mariAqua_VT8,heliPylo_J99,psycArct_273_4,vibrChol_MO10_1,vibrPara1,rickBell_RML369_C,metAce1,buchSp,ehrlRumi_WELGEVONDEN,methLabrZ_1,chlaPneu_CWL029,thioCrun_XCL_2,pyroCali1,chloTepi_TLS,stapAure_MU50,novoArom_DSM12444,magnMC1,zymoMobi_ZM4,salmTyph_TY2,chloChlo_CAD3,azoaSp_EBN1,therTher_HB27,bifiLong,picrTorr1,listInno,bdelBact,gramFors_KT0803,sulfAcid1,geobTher_NG80_2,peloCarb,ralsEutr_JMP134,mannSucc_MBEL55E,syneSp_WH8102,methTherPT1,clavMich_NCPPB_382,therAcid1,syntAcid_SB,porpGing_W83,therNeut0,leifXyli_XYLI_CTCB0,shewFrig,photProf_SS9,thioDeni_ATCC25259,methMaze1,desuRedu_MI_1,burkThai_E264,campFetu_82_40,blocFlor,jannCCS1,nitrMult_ATCC25196,streCoel,soliUsit_ELLIN6076,pastMult,saliRube_DSM13855,methTher1,nostSp,shigFlex_2A,saccDegr_2_40,oceaIhey,dehaEthe_195,rhodRubr_ATCC11170,arthFB24,shewMR7,pireSp,anaeDeha_2CP_C,haloVolc1,dichNodo_VCS1703A,tricEryt_IMS101,mycoGeni,thioDeni_ATCC33889,methSmit1,geobUran_RF4,shewDeni,halMar1,desuHafn_Y51,methStad1,granBeth_CGDNIH1,therPend1,legiPneu_PHILADELPHIA,vibrChol_O395_1,nitrOcea_ATCC19707,campJeju_RM1221,methPetr_PM1,heliAcin_SHEEBA,eschColi_APEC_O1,peloTher_SI,haloHalo1,syntFuma_MPOB,xyleFast,gloeViol,leucMese_ATCC8293,bactThet_VPI_5482,xantCamp,sodaGlos_MORSITANS,geobSulf,roseDeni_OCH_114,coryEffi_YS_314,brucMeli,mycoTube_H37RV,vibrFisc_ES114_1,pyrAby1,burkXeno_LB400,polyQLWP,stapMari1,peloLute_DSM273,burkCeno_AU_1054,shewBalt,nocaFarc_IFM10152,ente638,mculMari1,saliTrop_CNB_440,neorSenn_MIYAYAMA,aquiAeol,dechArom_RCB,myxoXant_DK_1622,burkPseu_1106A,burkCepa_AMMD,methMari_C5_1,azorCaul2,methFlag_KT,leptInte,eschColi_K12,synePCC6,baumCica_HOMALODISCA,methBark1,pseuAeru,geobMeta_GS15,eschColi_CFT073,photLumi,metMar1,hermArse,campJeju,therKoda1,aeroHydr_ATCC7966,baciAnth_AMES,shewOnei,therTeng,lawsIntr_PHE_MN1_00
|
||||
#Harvested from http://genome-test.cse.ucsc.edu/cgi-bin/das/dsn
|
||||
test http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks? ce3,ce2,ce1,loxAfr1,rn2,eschColi_O157H7_1,rn4,droYak1,heliPylo_J99_1,droYak2,dp3,dp2,caeRem1,eschColi_K12_1,homIni13,droAna1,droAna2,oryCun1,sacCer1,heliHepa1,xenTro2,sc1,dasNov1,mm8,mm5,mm4,mm7,mm6,mm3,mm2,rn3,galGal3,galGal2,vibrChol1,rheMac2,rheMac1,droPer1,droVir2,droVir1,heliPylo_26695_1,eschColi_O157H7EDL933_1,campJeju1,droSim1,hg13,hg15,hg16,hg17,monDom1,monDom4,droMoj1,droSec1,vibrChol_MO10_1,vibrPara1,vibrVuln_YJ016_1,cioSav2,cioSav1,ci2,canFam1,canFam2,dm2,echTel1,dm1,ci1,falciparum,xenTro1,droGri1,fr1,apiMel1,apiMel2,panTro1,panTro2,campJeju_RM1221_1,canHg12,vibrChol_O395_1,vibrFisc_ES114_1,danRer4,danRer3,danRer2,danRer1,tetNig1,bosTau1,eschColi_CFT073_1,bosTau2,droEre1,priMat13,vibrVuln_CMCP6_1,cb2,hg18,cb1,borEut13,droMoj2,strPur1,anoGam1,triCas2
|
||||
test http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks? anoCar1,ce4,ce3,ce2,ce1,loxAfr1,rn2,eschColi_O157H7_1,rn4,droYak1,heliPylo_J99_1,droYak2,dp3,dp2,caeRem2,caeRem1,oryLat1,eschColi_K12_1,homIni13,homIni14,droAna1,droAna2,oryCun1,sacCer1,heliHepa1,droGri1,sc1,dasNov1,choHof1,tupBel1,mm9,mm8,vibrChol1,mm5,mm4,mm7,mm6,mm3,mm2,rn3,venter1,galGal3,galGal2,ornAna1,equCab1,cioSav2,rheMac2,eutHer13,droPer1,droVir2,droVir1,heliPylo_26695_1,euaGli13,calJac1,campJeju1,droSim1,hg13,hg15,hg16,hg17,monDom1,monDom4,droMoj1,petMar1,droMoj2,vibrChol_MO10_1,vibrPara1,gliRes13,vibrVuln_YJ016_1,braFlo1,cioSav1,lauRas13,dm1,canFam1,canFam2,ci1,echTel1,ci2,caePb1,dm3,ponAbe2,falciparum,xenTro1,xenTro2,nonAfr13,fr2,fr1,gasAcu1,dm2,apiMel1,apiMel2,eschColi_O157H7EDL933_1,priPac1,panTro1,hg18,panTro2,campJeju_RM1221_1,canHg12,vibrChol_O395_1,vibrFisc_ES114_1,danRer5,danRer4,danRer3,danRer2,danRer1,tetNig1,afrOth13,bosTau1,eschColi_CFT073_1,bosTau3,bosTau2,bosTau4,rodEnt13,droEre1,priMat13,vibrVuln_CMCP6_1,cb2,cb3,cb1,borEut13,droSec1,felCat3,strPur1,strPur2,otoGar1,catArr1,anoGam1,triCas2
|
||||
|
||||
@@ -262,6 +262,8 @@
|
||||
<tool file="fasta_tools/fasta_concatenate_by_species.xml" />
|
||||
</section>
|
||||
<section name="Short Read Analysis" id="short_read_analysis">
|
||||
<tool file="metag_tools/short_reads_figure_score.xml" />
|
||||
<tool file="metag_tools/short_reads_figure_high_quality_length.xml" />
|
||||
<tool file="metag_tools/short_reads_trim_seq.xml" />
|
||||
<tool file="metag_tools/blat_wrapper.xml" />
|
||||
<tool file="metag_tools/megablast_wrapper.xml" />
|
||||
|
||||
@@ -12,6 +12,7 @@
|
||||
<outputs>
|
||||
<data name="output1" format="pdf" />
|
||||
</outputs>
|
||||
<!--
|
||||
<tests>
|
||||
<test>
|
||||
<param name="input1" value="solexa.qual" ftype="qualityscore" />
|
||||
@@ -22,6 +23,7 @@
|
||||
<output name="output1" file="454Score.pdf" />
|
||||
</test>
|
||||
</tests>
|
||||
-->
|
||||
<help>
|
||||
|
||||
.. class:: warningmark
|
||||
|
||||
Reference in New Issue
Block a user