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Merge pull request #6109 from aloraine/update_bioviz_link

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Update BioViz URL
This commit is contained in:
Dannon
2018-05-15 11:24:17 -04:00
committed by GitHub
parent bf51c83526 ea22750604
commit 5903edd4da
7 changed files with 7 additions and 7 deletions
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display_applications/igb/bam.xml
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@@ -1,6 +1,6 @@
<display id="igb_bam" version="0.0.0" name="display in IGB">
<link id="View" name="View">
<url>http://bioviz.org/igb/galaxy.html?version=${bam_file.dbkey}&amp;feature_url_0=${bam_file.url}&amp;sym_name_0=${niceName}&amp;sym_method_0=${bam_file.url}&amp;query_url=${bam_file.url}&amp;server_url=galaxy</url>
<url>http://bioviz.org/galaxy.html?version=${bam_file.dbkey}&amp;feature_url_0=${bam_file.url}&amp;sym_name_0=${niceName}&amp;sym_method_0=${bam_file.url}&amp;query_url=${bam_file.url}&amp;server_url=galaxy</url>
<param type="data" name="bam_file_for_name" viewable="False"/>
<param type="template" name="niceName" viewable="False" strip="True">
#import re
display_applications/igb/bb.xml
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@@ -1,6 +1,6 @@
<display id="igb_bb" version="1.0.0" name="display in IGB">
<link id="View" name="View">
<url>http://bioviz.org/igb/galaxy.html?version=${bigbed_file.dbkey}&amp;loadresidues=false&amp;feature_url_0=${bigbed_file.url}&amp;sym_name_0=${niceName}&amp;sym_method_0=${bigbed_file.url}&amp;query_url=${bigbed_file.url}&amp;server_url=galaxy</url>
<url>http://bioviz.org/galaxy.html?version=${bigbed_file.dbkey}&amp;loadresidues=false&amp;feature_url_0=${bigbed_file.url}&amp;sym_name_0=${niceName}&amp;sym_method_0=${bigbed_file.url}&amp;query_url=${bigbed_file.url}&amp;server_url=galaxy</url>
<param type="data" name="bigbed_file_for_name" viewable="False"/>
<param type="template" name="niceName" viewable="False" strip="True">
#import re
display_applications/igb/bed.xml
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@@ -9,7 +9,7 @@
</param>
<param type="data" name="bed_file" url="${niceName}.bed" />
<param type="template" name="bioviz" strip="True" >
http://bioviz.org/igb/galaxy.html?version=${bed_file.dbkey}&amp;loadresidues=false&amp;feature_url_0=${bed_file.url}&amp;sym_name_0=${niceName}&amp;sym_method_0=${bed_file.url}&amp;query_url=${bed_file.url}&amp;server_url=galaxy
http://bioviz.org/galaxy.html?version=${bed_file.dbkey}&amp;loadresidues=false&amp;feature_url_0=${bed_file.url}&amp;sym_name_0=${niceName}&amp;sym_method_0=${bed_file.url}&amp;query_url=${bed_file.url}&amp;server_url=galaxy
</param>
</link>
</display>
display_applications/igb/bedgraph.xml
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@@ -9,7 +9,7 @@
</param>
<param type="data" name="bedgraph_file" url="${niceName}.bed.bedgraph" />
<param type="template" name="bioviz" strip="True" >
http://bioviz.org/igb/galaxy.html?version=${bedgraph_file.dbkey}&amp;loadresidues=false&amp;feature_url_0=${bedgraph_file.url}&amp;sym_name_0=${niceName}&amp;sym_method_0=${bedgraph_file.url}&amp;query_url=${bedgraph_file.url}&amp;server_url=galaxy
http://bioviz.org/galaxy.html?version=${bedgraph_file.dbkey}&amp;loadresidues=false&amp;feature_url_0=${bedgraph_file.url}&amp;sym_name_0=${niceName}&amp;sym_method_0=${bedgraph_file.url}&amp;query_url=${bedgraph_file.url}&amp;server_url=galaxy
</param>
</link>
</display>
display_applications/igb/bigwig.xml
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@@ -1,6 +1,6 @@
<display id="igb_bigwig" version="1.0.0" name="display in IGB">
<link id="View" name="View">
<url>http://bioviz.org/igb/galaxy.html?version=${bigwig_file.dbkey}&amp;loadresidues=false&amp;feature_url_0=${bigwig_file.url}&amp;sym_name_0=${niceName}&amp;sym_method_0=${bigwig_file.url}&amp;query_url=${bigwig_file.url}&amp;server_url=galaxy</url>
<url>http://bioviz.org/galaxy.html?version=${bigwig_file.dbkey}&amp;loadresidues=false&amp;feature_url_0=${bigwig_file.url}&amp;sym_name_0=${niceName}&amp;sym_method_0=${bigwig_file.url}&amp;query_url=${bigwig_file.url}&amp;server_url=galaxy</url>
<param type="data" name="bigwig_file_for_name" viewable="False"/>
<param type="template" name="niceName" viewable="False" strip="True">
#import re
display_applications/igb/gtf.xml
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@@ -9,7 +9,7 @@
</param>
<param type="data" name="gtf_file" url="${niceName}.gtf" />
<param type="template" name="bioviz" strip="True" >
http://bioviz.org/igb/galaxy.html?version=${gtf_file.dbkey}&amp;loadresidues=false&amp;feature_url_0=${gtf_file.url}&amp;sym_name_0=${niceName}&amp;sym_method_0=${gtf_file.url}&amp;query_url=${gtf_file.url}&amp;server_url=galaxy
http://bioviz.org/galaxy.html?version=${gtf_file.dbkey}&amp;loadresidues=false&amp;feature_url_0=${gtf_file.url}&amp;sym_name_0=${niceName}&amp;sym_method_0=${gtf_file.url}&amp;query_url=${gtf_file.url}&amp;server_url=galaxy
</param>
</link>
</display>
display_applications/igb/wig.xml
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@@ -1,6 +1,6 @@
<display id="igb_wig" version="1.0.0" name="display in IGB">
<link id="View" name="View">
<url>http://bioviz.org/igb/galaxy.html?version=${wig_file.dbkey}&amp;${position}&amp;loadresidues=false&amp;feature_url_0=${wig_file.url}&amp;sym_name_0=${niceName}&amp;sym_method_0=${wig_file.url}&amp;query_url=${wig_file.url}&amp;server_url=galaxy</url>
<url>http://bioviz.org/galaxy.html?version=${wig_file.dbkey}&amp;${position}&amp;loadresidues=false&amp;feature_url_0=${wig_file.url}&amp;sym_name_0=${niceName}&amp;sym_method_0=${wig_file.url}&amp;query_url=${wig_file.url}&amp;server_url=galaxy</url>
<param type="data" name="wig_file_for_name" viewable="False"/>
<param type="template" name="niceName" viewable="False" strip="True">
#import re