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Add the modENCODEfly and modENCODEworm data source tools.

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This commit is contained in:
Greg Von Kuster
2010-05-06 19:39:27 -04:00
parent bc87138dca
commit 53363c793e
2 changed files with 54 additions and 0 deletions
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tools/data_source/fly_modencode.xml
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<?xml version="1.0"?>
<tool name="modENCODE fly" id="modENCODEfly" tool_type="data_source">
<description>server</description>
<command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command>
<inputs action="http://modencode.oicr.on.ca/fgb2/gbrowse/fly" check_values="false" target="_top">
<display>go to modENCODE fly server $GALAXY_URL</display>
<param name="GALAXY_URL" type="baseurl" value="/tool_runner?tool_id=modENCODEfly" />
</inputs>
<request_param_translation>
<request_param galaxy_name="URL" remote_name="URL" missing="">
<append_param separator="&amp;" first_separator="?" join="=">
<value name="d" missing="" />
<value name="dbkey" missing="" />
<value name="q" missing="" />
<value name="s" missing="" />
<value name="t" missing="" />
</append_param>
</request_param>
<request_param galaxy_name="URL_method" remote_name="URL_method" missing="post" />
<request_param galaxy_name="data_type" remote_name="data_type" missing="txt" />
</request_param_translation>
<uihints minwidth="800"/>
<outputs>
<data name="output" format="txt" />
</outputs>
<options sanitize="False" refresh="True"/>
</tool>
tools/data_source/worm_modencode.xml
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<?xml version="1.0"?>
<tool name="modENCODE worm" id="modENCODEworm" tool_type="data_source">
<description>server</description>
<command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command>
<inputs action="http://modencode.oicr.on.ca/fgb2/gbrowse/worm" check_values="false" target="_top">
<display>go to modENCODE worm server $GALAXY_URL</display>
<param name="GALAXY_URL" type="baseurl" value="/tool_runner?tool_id=modENCODEworm" />
</inputs>
<request_param_translation>
<request_param galaxy_name="URL" remote_name="URL" missing="">
<append_param separator="&amp;" first_separator="?" join="=">
<value name="d" missing="" />
<value name="dbkey" missing="" />
<value name="q" missing="" />
<value name="s" missing="" />
<value name="t" missing="" />
</append_param>
</request_param>
<request_param galaxy_name="URL_method" remote_name="URL_method" missing="post" />
<request_param galaxy_name="data_type" remote_name="data_type" missing="txt" />
</request_param_translation>
<uihints minwidth="800"/>
<outputs>
<data name="output" format="txt" />
</outputs>
<options sanitize="False" refresh="True"/>
</tool>