From 53363c793e4187474bd2ad550fa886099bf68de3 Mon Sep 17 00:00:00 2001
From: Greg Von Kuster <greg@bx.psu.edu>
Date: Thu, 6 May 2010 19:39:27 -0400
Subject: [PATCH] Add the modENCODEfly and modENCODEworm data source tools.

---
 tools/data_source/fly_modencode.xml  | 27 +++++++++++++++++++++++++++
 tools/data_source/worm_modencode.xml | 27 +++++++++++++++++++++++++++
 2 files changed, 54 insertions(+)
 create mode 100644 tools/data_source/fly_modencode.xml
 create mode 100644 tools/data_source/worm_modencode.xml

diff --git a/tools/data_source/fly_modencode.xml b/tools/data_source/fly_modencode.xml
new file mode 100644
index 00000000000..e377e0d7e0e
--- /dev/null
+++ b/tools/data_source/fly_modencode.xml
@@ -0,0 +1,27 @@
+<?xml version="1.0"?>
+<tool name="modENCODE fly" id="modENCODEfly" tool_type="data_source">
+    <description>server</description>
+    <command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command>
+    <inputs action="http://modencode.oicr.on.ca/fgb2/gbrowse/fly" check_values="false" target="_top"> 
+        <display>go to modENCODE fly server $GALAXY_URL</display>
+        <param name="GALAXY_URL" type="baseurl" value="/tool_runner?tool_id=modENCODEfly" />
+    </inputs>
+    <request_param_translation>
+        <request_param galaxy_name="URL" remote_name="URL" missing="">
+            <append_param separator="&amp;" first_separator="?" join="=">
+                <value name="d" missing="" />
+                <value name="dbkey" missing="" />
+                <value name="q" missing="" />
+                <value name="s" missing="" />
+                <value name="t" missing="" />
+            </append_param>
+        </request_param>
+        <request_param galaxy_name="URL_method" remote_name="URL_method" missing="post" />
+        <request_param galaxy_name="data_type" remote_name="data_type" missing="txt" />
+    </request_param_translation>
+    <uihints minwidth="800"/>
+    <outputs>
+        <data name="output" format="txt" />
+    </outputs>
+    <options sanitize="False" refresh="True"/>
+</tool>
diff --git a/tools/data_source/worm_modencode.xml b/tools/data_source/worm_modencode.xml
new file mode 100644
index 00000000000..4087a789dfc
--- /dev/null
+++ b/tools/data_source/worm_modencode.xml
@@ -0,0 +1,27 @@
+<?xml version="1.0"?>
+<tool name="modENCODE worm" id="modENCODEworm" tool_type="data_source">
+    <description>server</description>
+    <command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command>
+    <inputs action="http://modencode.oicr.on.ca/fgb2/gbrowse/worm" check_values="false" target="_top"> 
+        <display>go to modENCODE worm server $GALAXY_URL</display>
+        <param name="GALAXY_URL" type="baseurl" value="/tool_runner?tool_id=modENCODEworm" />
+    </inputs>
+    <request_param_translation>
+        <request_param galaxy_name="URL" remote_name="URL" missing="">
+            <append_param separator="&amp;" first_separator="?" join="=">
+                <value name="d" missing="" />
+                <value name="dbkey" missing="" />
+                <value name="q" missing="" />
+                <value name="s" missing="" />
+                <value name="t" missing="" />
+            </append_param>
+        </request_param>
+        <request_param galaxy_name="URL_method" remote_name="URL_method" missing="post" />
+        <request_param galaxy_name="data_type" remote_name="data_type" missing="txt" />
+    </request_param_translation>
+    <uihints minwidth="800"/>
+    <outputs>
+        <data name="output" format="txt" />
+    </outputs>
+    <options sanitize="False" refresh="True"/>
+</tool>