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Have Extract Genomic DNA tool copy metadata from input file.

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This will allow the tool to keep column assignments when outputing interval format.
This commit is contained in:
Daniel Blankenberg
2009-11-16 10:57:31 -05:00
parent 91d97585c1
commit 4d7be79a2b
1 changed files with 2 additions and 2 deletions
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tools/extract/extract_genomic_dna.xml
+2 -2
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@@ -1,4 +1,4 @@
<tool id="Extract genomic DNA 1" name="Extract Genomic DNA" version="2.2.0">
<tool id="Extract genomic DNA 1" name="Extract Genomic DNA" version="2.2.1">
<description>using coordinates from assembled/unassembled genomes</description>
<command interpreter="python">extract_genomic_dna.py $input $out_file1 -1 ${input.metadata.chromCol},${input.metadata.startCol},${input.metadata.endCol},${input.metadata.strandCol} -d $dbkey -o $out_format -g ${GALAXY_DATA_INDEX_DIR}</command>
<inputs>
@@ -12,7 +12,7 @@
</param>
</inputs>
<outputs>
<data format="fasta" name="out_file1">
<data format="fasta" name="out_file1" metadata_source="input">
<change_format>
<when input="out_format" value="interval" format="interval" />
</change_format>