starting user facing notes

This commit is contained in:
Helena Rasche
2021-02-17 13:15:22 +01:00
parent f614ec6c9a
commit 4ca310bf00
+64 -52
View File
@@ -8,32 +8,81 @@ January 2021 Galaxy Release (v 21.01)
Highlights
===========================================================
**Feature1**
Feature description.
* Galaxy Markdown enhancements including integration of visualizations - allow embedding
visualizations in Galaxy Markdown (workflow invocation reports and pages) with
Markdown editor support and allow exporting workflow reports directly to Galaxy Pages.
`Pull Request 10241`_, `Pull Request 10288`_, `Pull Request 10404`_
**Feature2**
Feature description.
* History panel rewrite (available in the UI as a beta option).
`Pull Request 8441`_, `Pull Request 11071`_, `Pull Request 10971`_
* Allow organizing the panel via EDAM ontology annotations.
(thanks to `@hexylena <https://github.com/hexylena>`__).
`Pull Request 10592`_
* Large overhaul over history import and export - including improved user experience, APIs, and allowing importing and exporting
to file sources plugins (including FTP).
`Pull Request 11054`_, `Pull Request 10993`_
* Various substantial improvements to data library user interface and performance
(thanks to `@OlegZharkov <https://github.com/OlegZharkov>`__).
`Pull Request 10204`_, `Pull Request 11099`_,
`Pull Request 10557`_, `Pull Request 10558`_,
`Pull Request 10807`_
* UI & API for Supporting Best Practice Workflows
`Pull Request 10988`_, `Pull Request 11025`_
* Add author and license metadata and corresponding web microdata annotations for tools
and workflows.
`Pull Request 10408`_
* Implement edit & upgrade subworkflow buttons in workflow editor.
`Pull Request 11032`_
* Allow the "Apply Rules" tool to attach tags to output datasets.
`Pull Request 10382`_
* Add S3 plugin for remote files browser.
`Pull Request 10523`_
* Support stopping Interactive Tools without deleting their outputs
`Pull Request 10497`_
* Allow InteractiveTools to use path-based proxying when ``requires_domain=False``.
`Pull Request 8596`_
* Auto-focus upload name in upload dialog.
`Pull Request 10487`_
* Add update time to workflow version selector in workflow editor.
`Pull Request 10492`_
* Use dataset selector in rules input dialog.
`Pull Request 10505`_
* Make primary extract workflow action button more visible
(thanks to `@hexylena <https://github.com/hexylena>`__).
`Pull Request 10583`_
* Revision of sharing component, adds url copy to clipboard feature
`Pull Request 10754`_
* Persist scroll/url information for GTN webhook
(thanks to `@hexylena <https://github.com/hexylena>`__).
`Pull Request 11290`_
**Feature3**
Feature description.
New Visualizations
===========================================================
.. visualizations
* hide purged datasets from visualizations
(thanks to `@OlegZharkov <https://github.com/OlegZharkov>`__).
`Pull Request 10483`_
* Integrate NORA's image viewer - a medical image viewer and annotation tool.
(thanks to `@bgruening <https://github.com/bgruening>`__).
`Pull Request 11035`_
* Add the OpenSeadragon viewer for deep zoom images
(thanks to `@gregvonkuster <https://github.com/gregvonkuster>`__).
`Pull Request 10756`_
* Fix reference error
(thanks to `@tmcgowan <https://github.com/tmcgowan>`__).
`Pull Request 10782`_
* Expand image formats for viewing in OpenSeadragon
(thanks to `@gregvonkuster <https://github.com/gregvonkuster>`__).
`Pull Request 11017`_
New Datatypes
===========================================================
@@ -42,34 +91,15 @@ New Datatypes
* initial commit for gfa2
(thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__).
`Pull Request 10270`_
* Datatypes refactoring
(thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
`Pull Request 10279`_
* Drop unnecessary list casting in Anndata datatype
`Pull Request 10296`_
* add ome.tiff datatype
(thanks to `@qiagu <https://github.com/qiagu>`__).
`Pull Request 10349`_
* Add support for the dzi (Deep Zoom Image) data format
(thanks to `@gregvonkuster <https://github.com/gregvonkuster>`__).
`Pull Request 10546`_
* GTF Sniffer Fix
(thanks to `@mtekman <https://github.com/mtekman>`__).
`Pull Request 10588`_
* Add datatype converters for various MD filetypes
(thanks to `@simonbray <https://github.com/simonbray>`__).
`Pull Request 10757`_
* AnnData Peek Fix
(thanks to `@mtekman <https://github.com/mtekman>`__).
`Pull Request 10986`_
* remove mutatable arguments from function calls
(thanks to `@bgruening <https://github.com/bgruening>`__).
`Pull Request 10998`_
* More mutable fixes
(thanks to `@bgruening <https://github.com/bgruening>`__).
`Pull Request 11003`_
* mypy type checking for more Galaxy packages
`Pull Request 11009`_
* Add nifti1 and nifti2 datatype
(thanks to `@bgruening <https://github.com/bgruening>`__).
`Pull Request 11020`_
@@ -84,8 +114,6 @@ New Datatypes
* Add minimal `msf` datatype
(thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
`Pull Request 11084`_
* Allow setting filename_pattern by client
`Pull Request 11108`_
Builtin Tool Updates
===========================================================
@@ -93,22 +121,6 @@ Builtin Tool Updates
.. tools
* Allow the Apply Rules tool to attach tags to output datasets.
`Pull Request 10382`_
* EDAM tool panel
(thanks to `@hexylena <https://github.com/hexylena>`__).
`Pull Request 10592`_
* Enhancements for galaxy-tool-test script.
`Pull Request 10620`_
* Speedup xml replacement
`Pull Request 10804`_
* Disable tool cache if there is a problem
`Pull Request 10808`_
* Update askomics IT to 4.1.1
(thanks to `@abretaud <https://github.com/abretaud>`__).
`Pull Request 10878`_
* Use "email_from" value from schema for tool error report email
`Pull Request 10956`_
* Put new toolshed tools in existing tool panel sections if the ID matches
`Pull Request 10984`_
* allow empty file uploads
(thanks to `@galaxyproject <https://github.com/galaxyproject>`__).
`Pull Request 11079`_