Keep header when converting sam to bam

Otherwise the converted datasets are not valid BAM files.
2026-10-31 02:28:09 +08:00 · 2018-01-11 14:13:02 +01:00
parent ea34bdc34d
commit 49dd02f409
2 changed files with 2 additions and 0 deletions
@@ -6,6 +6,7 @@
    <command><![CDATA[
        samtools view
            -b
+            -h
            -@ \${GALAXY_SLOTS:-2}
            -o '${output}'
            '$input'
@@ -6,6 +6,7 @@
    #if $input1:
        samtools view
            -b
+            -h
            -@ \${GALAXY_SLOTS:-2}
            -o '${output}'
            '$input1'