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Merge pull request #3896 from bgruening/bugfix_cytoscape

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Cytoscape bugfix for SIF files
This commit is contained in:
Dannon Baker
2017-04-06 17:27:39 -04:00
committed by GitHub
parent 69ff6ab906 ee66994c44
commit 483f25c5c2
5 changed files with 71 additions and 60 deletions
Download Patch File Download Diff File Expand all files Collapse all files
config/plugins/visualizations/charts/static/repository/build/cytoscape_viewer.js
+6 -2
View File
@@ -395,8 +395,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
// Parse each line of the SIF file
var _parse = function( line, i ) {
var source = _getNode( line[0] ), interaction = ( line[1] ? line[1] : "" ), j, length;
var source, interaction, j, length;
line = ( line.split('\t').length > 1 ) ? line.split('\t') : line.split(' ');
source = _getNode( line[0] );
interaction = ( line[1] ? line[1] : "" );
if( line.length && line.length > 0 && line[0] !== "" ) {
if( interaction !== "" ) {
// Get all the target nodes for a source
@@ -451,7 +453,9 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
SIFJS.parse = function( text ) {
var lines = text.split('\n'), i, length, nodesarr, linksarr;
for ( i = 0, length = lines.length; i < length; i++ ) {
_parse( lines[i], i );
if( lines[i] !== "" ) {
_parse( lines[i], i );
}
}
nodesarr = _toArr( nodes );
linksarr = _toArr( links );
config/plugins/visualizations/charts/static/repository/build/cytoscape_viewer.js.map
+1 -1
View File
File diff suppressed because one or more lines are too long
config/plugins/visualizations/charts/static/repository/build/registry.js
+57 -54
View File
@@ -44,15 +44,18 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
/* 0 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [], __WEBPACK_AMD_DEFINE_RESULT__ = function() { return {nvd3_bar:__webpack_require__( 3 ), nvd3_bar_horizontal:__webpack_require__( 6 ), nvd3_bar_horizontal_stacked:__webpack_require__( 7 ), nvd3_bar_stacked:__webpack_require__( 8 ), nvd3_line:__webpack_require__( 9 ), nvd3_line_focus:__webpack_require__( 10 ), nvd3_scatter:__webpack_require__( 11 ), nvd3_stackedarea:__webpack_require__( 12 ), nvd3_stackedarea_full:__webpack_require__( 13 ), nvd3_stackedarea_stream:__webpack_require__( 14 ), nvd3_pie:__webpack_require__( 15 ), nvd3_histogram:__webpack_require__( 16 ), nvd3_histogram_discrete:__webpack_require__( 17 ), jqplot_bar:__webpack_require__( 18 ), jqplot_boxplot:__webpack_require__( 20 ), jqplot_histogram_discrete:__webpack_require__( 21 ), jqplot_line:__webpack_require__( 22 ), jqplot_scatter:__webpack_require__( 23 ), biojs_msa:__webpack_require__( 24 ), biojs_drawrnajs:__webpack_require__( 25 ), biojs_phylocanvas:__webpack_require__( 26 ), others_example:__webpack_require__( 27 ), others_heatmap:__webpack_require__( 28 ), others_heatmap_cluster:__webpack_require__( 29 ), cytoscape_viewer:__webpack_require__( 30 ), pv_viewer:__webpack_require__( 31 ), benfred_venn:__webpack_require__( 32 ), ngl_viewer:__webpack_require__( 33 ),} }.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [], __WEBPACK_AMD_DEFINE_RESULT__ = function() { return {nvd3_bar:__webpack_require__( 6 ), nvd3_bar_horizontal:__webpack_require__( 9 ), nvd3_bar_horizontal_stacked:__webpack_require__( 10 ), nvd3_bar_stacked:__webpack_require__( 11 ), nvd3_line:__webpack_require__( 12 ), nvd3_line_focus:__webpack_require__( 13 ), nvd3_scatter:__webpack_require__( 14 ), nvd3_stackedarea:__webpack_require__( 15 ), nvd3_stackedarea_full:__webpack_require__( 16 ), nvd3_stackedarea_stream:__webpack_require__( 17 ), nvd3_pie:__webpack_require__( 18 ), nvd3_histogram:__webpack_require__( 19 ), nvd3_histogram_discrete:__webpack_require__( 20 ), jqplot_bar:__webpack_require__( 21 ), jqplot_boxplot:__webpack_require__( 23 ), jqplot_histogram_discrete:__webpack_require__( 24 ), jqplot_line:__webpack_require__( 25 ), jqplot_scatter:__webpack_require__( 26 ), biojs_msa:__webpack_require__( 27 ), biojs_drawrnajs:__webpack_require__( 28 ), biojs_phylocanvas:__webpack_require__( 29 ), others_example:__webpack_require__( 30 ), others_heatmap:__webpack_require__( 31 ), others_heatmap_cluster:__webpack_require__( 32 ), cytoscape_viewer:__webpack_require__( 33 ), pv_viewer:__webpack_require__( 34 ), benfred_venn:__webpack_require__( 35 ), ngl_viewer:__webpack_require__( 36 ),} }.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 1 */,
/* 2 */,
/* 3 */
/* 3 */,
/* 4 */,
/* 5 */,
/* 6 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(4) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(7) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
return $.extend(true, {}, nvd3_config, {
title : 'Bar diagram',
description : 'Renders a regular bar diagram using NVD3 hosted at http://www.nvd3.org.',
@@ -73,10 +76,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 4 */
/* 7 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(5) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(8) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
return $.extend( true, {}, default_config, {
title : '',
library : 'NVD3',
@@ -99,7 +102,7 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 5 */
/* 8 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [], __WEBPACK_AMD_DEFINE_RESULT__ = function() {
@@ -183,10 +186,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 6 */
/* 9 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(4) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(7) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
return $.extend( true, {}, nvd3_config, {
title : 'Horizontal',
description : 'Renders a horizontal bar diagram using NVD3 hosted at http://www.nvd3.org.',
@@ -207,10 +210,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 7 */
/* 10 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(4) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(7) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
return $.extend( true, {}, nvd3_config, {
title : 'Stacked horizontal',
description : 'Renders a stacked horizontal bar diagram using NVD3 hosted at http://www.nvd3.org.',
@@ -232,10 +235,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 8 */
/* 11 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(4) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(7) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
return $.extend( true, {}, nvd3_config, {
title : 'Stacked',
description : 'Renders a stacked bar diagram using NVD3 hosted at http://www.nvd3.org.',
@@ -257,10 +260,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 9 */
/* 12 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(4) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(7) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
return $.extend( true, {}, nvd3_config, {
title : 'Line chart',
description : 'Renders a line chart using NVD3 hosted at http://www.nvd3.org.',
@@ -282,10 +285,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 10 */
/* 13 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(4) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(7) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
return $.extend( true, {}, nvd3_config, {
title : 'Line with focus',
description : 'Renders a line chart with focus panel using NVD3 hosted at http://www.nvd3.org.',
@@ -307,10 +310,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 11 */
/* 14 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(4) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(7) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
return $.extend( true, {}, nvd3_config, {
title : 'Scatter plot',
description : 'Renders a scatter plot using NVD3 hosted at http://www.nvd3.org.',
@@ -331,10 +334,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 12 */
/* 15 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(4) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(7) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
return $.extend( true, {}, nvd3_config, {
title : 'Stacked area',
zoomable : true,
@@ -357,10 +360,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 13 */
/* 16 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(4) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(7) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
return $.extend( true, {}, nvd3_config, {
title : 'Expanded',
zoomable : true,
@@ -383,10 +386,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 14 */
/* 17 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(4) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(7) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
return $.extend(true, {}, nvd3_config, {
title : 'Stream',
description : 'Renders a stream chart using NVD3 hosted at http://www.nvd3.org.',
@@ -410,10 +413,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 15 */
/* 18 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(5) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(8) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
return $.extend( true, {}, default_config, {
title : 'Pie chart',
description : 'Renders a pie chart using NVD3 hosted at http://www.nvd3.org.',
@@ -488,10 +491,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 16 */
/* 19 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(5) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(8) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
return $.extend( true, {}, default_config, {
library : 'NVD3',
tag : 'svg',
@@ -520,10 +523,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 17 */
/* 20 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(5) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(8) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
return $.extend(true, {}, default_config, {
library : 'NVD3',
tag : 'svg',
@@ -542,10 +545,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 18 */
/* 21 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(19) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( plot_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(22) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( plot_config ) {
return $.extend( true, {}, plot_config, {
title : 'Bar diagram',
description : 'Renders a bar diagram using jqPlot hosted at http://www.jqplot.com.',
@@ -566,10 +569,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 19 */
/* 22 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(5) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(8) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
return $.extend(true, {}, default_config, {
title : '',
library : 'jqPlot',
@@ -593,10 +596,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 20 */
/* 23 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(19) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( plot_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(22) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( plot_config ) {
return $.extend( true, {}, plot_config, {
title : 'Box plot',
library : 'jqPlot',
@@ -614,10 +617,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 21 */
/* 24 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(19) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(22) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
return $.extend( true, {}, default_config, {
title : 'Discrete Histogram',
description : 'Derives a discrete histogram from tabular data using R and renders a regular bar diagram using jqPlot hosted at http://www.jqplot.com.',
@@ -633,10 +636,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 22 */
/* 25 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(19) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( plot_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(22) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( plot_config ) {
return $.extend( true, {}, plot_config, {
title : 'Line chart',
description : 'Renders a line chart using jqPlot hosted at http://www.jqplot.com.',
@@ -657,10 +660,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 23 */
/* 26 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(19) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( plot_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(22) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( plot_config ) {
return $.extend( true, {}, plot_config, {
title : 'Scatter plot',
description : 'Renders a scatter plot using jqPlot hosted at http://www.jqplot.com.',
@@ -680,7 +683,7 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 24 */
/* 27 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [], __WEBPACK_AMD_DEFINE_RESULT__ = function() {
@@ -699,7 +702,7 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 25 */
/* 28 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [], __WEBPACK_AMD_DEFINE_RESULT__ = function() {
@@ -713,7 +716,7 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 26 */
/* 29 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [], __WEBPACK_AMD_DEFINE_RESULT__ = function() {
@@ -804,7 +807,7 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
/***/ },
/* 27 */
/* 30 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [], __WEBPACK_AMD_DEFINE_RESULT__ = function() {
@@ -825,10 +828,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 28 */
/* 31 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(5) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(8) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
return $.extend( true, {}, default_config, {
title : 'Heatmap',
description : 'Renders a heatmap from matrix data provided in 3-column format (x, y, observation).',
@@ -891,10 +894,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 29 */
/* 32 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(28) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(31) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
return $.extend( true, {}, default_config, {
title : 'Clustered Heatmap',
description : 'Applies hierarchical clustering to a matrix using R. The data has to be provided in 3-column format. The result is displayed as clustered heatmap.',
@@ -903,7 +906,7 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 30 */
/* 33 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [], __WEBPACK_AMD_DEFINE_RESULT__ = function() {
@@ -996,7 +999,7 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
/***/ },
/* 31 */
/* 34 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [], __WEBPACK_AMD_DEFINE_RESULT__ = function() {
@@ -1104,7 +1107,7 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 32 */
/* 35 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [], __WEBPACK_AMD_DEFINE_RESULT__ = function() {
@@ -1133,7 +1136,7 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 33 */
/* 36 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [], __WEBPACK_AMD_DEFINE_RESULT__ = function() {
config/plugins/visualizations/charts/static/repository/build/registry.js.map
+1 -1
View File
File diff suppressed because one or more lines are too long
config/plugins/visualizations/charts/static/repository/utilities/sifjson.js
+6 -2
View File
@@ -18,8 +18,10 @@ define( [], function() {
// Parse each line of the SIF file
var _parse = function( line, i ) {
var source = _getNode( line[0] ), interaction = ( line[1] ? line[1] : "" ), j, length;
var source, interaction, j, length;
line = ( line.split('\t').length > 1 ) ? line.split('\t') : line.split(' ');
source = _getNode( line[0] );
interaction = ( line[1] ? line[1] : "" );
if( line.length && line.length > 0 && line[0] !== "" ) {
if( interaction !== "" ) {
// Get all the target nodes for a source
@@ -74,7 +76,9 @@ define( [], function() {
SIFJS.parse = function( text ) {
var lines = text.split('\n'), i, length, nodesarr, linksarr;
for ( i = 0, length = lines.length; i < length; i++ ) {
_parse( lines[i], i );
if( lines[i] !== "" ) {
_parse( lines[i], i );
}
}
nodesarr = _toArr( nodes );
linksarr = _toArr( links );