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Fix recursion issue in gff_filter_by_feature_count

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This commit is contained in:
mvdbeek
2018-11-07 19:26:52 +00:00
committed by Nicola Soranzo
parent 6da5157181
commit 4760a0ac0f
1 changed files with 2 additions and 2 deletions
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lib/galaxy/datatypes/util/gff_util.py
+2 -2
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@@ -188,7 +188,7 @@ class GFFReaderWrapper(NiceReaderWrapper):
if not self.seed_interval:
while not self.seed_interval:
try:
self.seed_interval = GenomicIntervalReader.next(self)
self.seed_interval = super(GenomicIntervalReader, self).__next__()
except ParseError as e:
handle_parse_error(e)
# TODO: When no longer supporting python 2.4 use finally:
@@ -215,7 +215,7 @@ class GFFReaderWrapper(NiceReaderWrapper):
feature_intervals.append(self.seed_interval)
while True:
try:
interval = GenomicIntervalReader.next(self)
interval = super(GenomicIntervalReader, self).__next__()
raw_size += len(self.current_line)
except StopIteration as e:
# No more intervals to read, but last feature needs to be