mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-24 16:30:27 +08:00
Merge pull request #8363 from ic4f/update_rst_files
Update RST files to reflect code structure changes
This commit is contained in:
John Chilton
@@ -0,0 +1,20 @@
|
||||
galaxy.config package
|
||||
=====================
|
||||
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||||
.. automodule:: galaxy.config
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||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy.config.script module
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||||
---------------------------
|
||||
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||||
.. automodule:: galaxy.config.script
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||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
|
||||
@@ -25,4 +25,12 @@ galaxy.datatypes.util.gff\_util module
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||||
:undoc-members:
|
||||
:show-inheritance:
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||||
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||||
galaxy.datatypes.util.maf\_utilities module
|
||||
-------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.datatypes.util.maf_utilities
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||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
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||||
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||||
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||||
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||||
@@ -14,6 +14,7 @@ Subpackages
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||||
galaxy.actions
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galaxy.auth
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galaxy.authnz
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galaxy.config
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galaxy.containers
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galaxy.datatypes
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galaxy.dependencies
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||||
@@ -30,6 +31,7 @@ Subpackages
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||||
galaxy.openid
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galaxy.quota
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galaxy.security
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galaxy.selenium
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galaxy.tool_util
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galaxy.tools
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galaxy.tours
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@@ -53,10 +55,10 @@ galaxy.app module
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:undoc-members:
|
||||
:show-inheritance:
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||||
|
||||
galaxy.config module
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--------------------
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galaxy.config\_watchers module
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------------------------------
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.. automodule:: galaxy.config
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||||
.. automodule:: galaxy.config_watchers
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||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
@@ -0,0 +1,83 @@
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||||
galaxy.selenium package
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||||
=======================
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||||
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||||
.. automodule:: galaxy.selenium
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||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
Subpackages
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||||
-----------
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||||
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||||
.. toctree::
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galaxy.selenium.scripts
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Submodules
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||||
----------
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||||
galaxy.selenium.cli module
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--------------------------
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||||
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.. automodule:: galaxy.selenium.cli
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:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.selenium.components module
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---------------------------------
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||||
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||||
.. automodule:: galaxy.selenium.components
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||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.selenium.data module
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---------------------------
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||||
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.. automodule:: galaxy.selenium.data
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:members:
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||||
:undoc-members:
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||||
:show-inheritance:
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||||
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||||
galaxy.selenium.driver\_factory module
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||||
--------------------------------------
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||||
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||||
.. automodule:: galaxy.selenium.driver_factory
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||||
:members:
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||||
:undoc-members:
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||||
:show-inheritance:
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||||
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||||
galaxy.selenium.has\_driver module
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----------------------------------
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.. automodule:: galaxy.selenium.has_driver
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||||
:members:
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||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
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||||
galaxy.selenium.navigates\_galaxy module
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----------------------------------------
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||||
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||||
.. automodule:: galaxy.selenium.navigates_galaxy
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:members:
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||||
:undoc-members:
|
||||
:show-inheritance:
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||||
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||||
galaxy.selenium.sizzle module
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-----------------------------
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||||
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.. automodule:: galaxy.selenium.sizzle
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||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
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||||
galaxy.selenium.smart\_components module
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----------------------------------------
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||||
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.. automodule:: galaxy.selenium.smart_components
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:members:
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||||
:undoc-members:
|
||||
:show-inheritance:
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||||
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||||
|
||||
@@ -0,0 +1,20 @@
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||||
galaxy.selenium.scripts package
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||||
===============================
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||||
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||||
.. automodule:: galaxy.selenium.scripts
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||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
Submodules
|
||||
----------
|
||||
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||||
galaxy.selenium.scripts.dump\_tour module
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-----------------------------------------
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||||
|
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.. automodule:: galaxy.selenium.scripts.dump_tour
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||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
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||||
@@ -0,0 +1,92 @@
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galaxy.tool\_util.linters package
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=================================
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||||
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.. automodule:: galaxy.tool_util.linters
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||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy.tool\_util.linters.citations module
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||||
------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.linters.citations
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.linters.command module
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----------------------------------------
|
||||
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||||
.. automodule:: galaxy.tool_util.linters.command
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:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.linters.cwl module
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------------------------------------
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||||
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.. automodule:: galaxy.tool_util.linters.cwl
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:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
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||||
galaxy.tool\_util.linters.general module
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----------------------------------------
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||||
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||||
.. automodule:: galaxy.tool_util.linters.general
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:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
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||||
galaxy.tool\_util.linters.help module
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-------------------------------------
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||||
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.. automodule:: galaxy.tool_util.linters.help
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||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
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||||
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||||
galaxy.tool\_util.linters.inputs module
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---------------------------------------
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||||
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||||
.. automodule:: galaxy.tool_util.linters.inputs
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:members:
|
||||
:undoc-members:
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||||
:show-inheritance:
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||||
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||||
galaxy.tool\_util.linters.outputs module
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----------------------------------------
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||||
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||||
.. automodule:: galaxy.tool_util.linters.outputs
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||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
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||||
galaxy.tool\_util.linters.stdio module
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--------------------------------------
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||||
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||||
.. automodule:: galaxy.tool_util.linters.stdio
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||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.linters.tests module
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--------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.linters.tests
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||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.linters.xml\_order module
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-------------------------------------------
|
||||
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||||
.. automodule:: galaxy.tool_util.linters.xml_order
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||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
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||||
@@ -13,8 +13,10 @@ Subpackages
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galaxy.tool_util.cwl
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galaxy.tool_util.deps
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galaxy.tool_util.linters
|
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galaxy.tool_util.locations
|
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galaxy.tool_util.parser
|
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galaxy.tool_util.verify
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|
||||
Submodules
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||||
----------
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||||
@@ -27,6 +29,14 @@ galaxy.tool\_util.fetcher module
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:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.lint module
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-----------------------------
|
||||
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||||
.. automodule:: galaxy.tool_util.lint
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:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.loader module
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-------------------------------
|
||||
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@@ -0,0 +1,52 @@
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galaxy.tool\_util.verify.asserts package
|
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========================================
|
||||
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||||
.. automodule:: galaxy.tool_util.verify.asserts
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy.tool\_util.verify.asserts.archive module
|
||||
-----------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.verify.asserts.archive
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.verify.asserts.hdf5 module
|
||||
--------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.verify.asserts.hdf5
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.verify.asserts.tabular module
|
||||
-----------------------------------------------
|
||||
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||||
.. automodule:: galaxy.tool_util.verify.asserts.tabular
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.verify.asserts.text module
|
||||
--------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.verify.asserts.text
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.verify.asserts.xml module
|
||||
-------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.verify.asserts.xml
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
|
||||
@@ -0,0 +1,43 @@
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galaxy.tool\_util.verify package
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||||
================================
|
||||
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||||
.. automodule:: galaxy.tool_util.verify
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
Subpackages
|
||||
-----------
|
||||
|
||||
.. toctree::
|
||||
|
||||
galaxy.tool_util.verify.asserts
|
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|
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Submodules
|
||||
----------
|
||||
|
||||
galaxy.tool\_util.verify.interactor module
|
||||
------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.verify.interactor
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.verify.script module
|
||||
--------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.verify.script
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tool\_util.verify.test\_data module
|
||||
------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tool_util.verify.test_data
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
|
||||
@@ -1,92 +0,0 @@
|
||||
galaxy.tools.linters package
|
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============================
|
||||
|
||||
.. automodule:: galaxy.tools.linters
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy.tools.linters.citations module
|
||||
-------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.linters.citations
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tools.linters.command module
|
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-----------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.linters.command
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tools.linters.cwl module
|
||||
-------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.linters.cwl
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tools.linters.general module
|
||||
-----------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.linters.general
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tools.linters.help module
|
||||
--------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.linters.help
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tools.linters.inputs module
|
||||
----------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.linters.inputs
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tools.linters.outputs module
|
||||
-----------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.linters.outputs
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tools.linters.stdio module
|
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---------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.linters.stdio
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tools.linters.tests module
|
||||
---------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.linters.tests
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tools.linters.xml\_order module
|
||||
--------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.linters.xml_order
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
|
||||
@@ -18,12 +18,10 @@ Subpackages
|
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galaxy.tools.expressions
|
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galaxy.tools.filters
|
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galaxy.tools.imp_exp
|
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galaxy.tools.linters
|
||||
galaxy.tools.parameters
|
||||
galaxy.tools.search
|
||||
galaxy.tools.toolbox
|
||||
galaxy.tools.util
|
||||
galaxy.tools.verify
|
||||
|
||||
Submodules
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||||
----------
|
||||
@@ -76,22 +74,6 @@ galaxy.tools.execute module
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tools.lint module
|
||||
------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.lint
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tools.lint\_util module
|
||||
------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.lint_util
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tools.repositories module
|
||||
--------------------------------
|
||||
|
||||
|
||||
@@ -1,52 +0,0 @@
|
||||
galaxy.tools.verify.asserts package
|
||||
===================================
|
||||
|
||||
.. automodule:: galaxy.tools.verify.asserts
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy.tools.verify.asserts.archive module
|
||||
------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.verify.asserts.archive
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tools.verify.asserts.hdf5 module
|
||||
---------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.verify.asserts.hdf5
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tools.verify.asserts.tabular module
|
||||
------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.verify.asserts.tabular
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tools.verify.asserts.text module
|
||||
---------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.verify.asserts.text
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tools.verify.asserts.xml module
|
||||
--------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.verify.asserts.xml
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
|
||||
@@ -1,43 +0,0 @@
|
||||
galaxy.tools.verify package
|
||||
===========================
|
||||
|
||||
.. automodule:: galaxy.tools.verify
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
Subpackages
|
||||
-----------
|
||||
|
||||
.. toctree::
|
||||
|
||||
galaxy.tools.verify.asserts
|
||||
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy.tools.verify.interactor module
|
||||
-------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.verify.interactor
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tools.verify.script module
|
||||
---------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.verify.script
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.tools.verify.test\_data module
|
||||
-------------------------------------
|
||||
|
||||
.. automodule:: galaxy.tools.verify.test_data
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
|
||||
@@ -14,6 +14,7 @@ Subpackages
|
||||
galaxy.util.logging
|
||||
galaxy.util.pastescript
|
||||
galaxy.util.path
|
||||
galaxy.util.tool_shed
|
||||
|
||||
Submodules
|
||||
----------
|
||||
|
||||
@@ -0,0 +1,36 @@
|
||||
galaxy.util.tool\_shed package
|
||||
==============================
|
||||
|
||||
.. automodule:: galaxy.util.tool_shed
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy.util.tool\_shed.common\_util module
|
||||
------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.util.tool_shed.common_util
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.util.tool\_shed.encoding\_util module
|
||||
--------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.util.tool_shed.encoding_util
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.util.tool\_shed.xml\_util module
|
||||
---------------------------------------
|
||||
|
||||
.. automodule:: galaxy.util.tool_shed.xml_util
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
|
||||
@@ -1,20 +0,0 @@
|
||||
galaxy.web.base package
|
||||
=======================
|
||||
|
||||
.. automodule:: galaxy.web.base
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy.web.base.controller module
|
||||
---------------------------------
|
||||
|
||||
.. automodule:: galaxy.web.base.controller
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
|
||||
@@ -11,7 +11,6 @@ Subpackages
|
||||
|
||||
.. toctree::
|
||||
|
||||
galaxy.web.base
|
||||
galaxy.web.framework
|
||||
galaxy.web.proxy
|
||||
|
||||
|
||||
@@ -0,0 +1,20 @@
|
||||
galaxy.webapps.base package
|
||||
===========================
|
||||
|
||||
.. automodule:: galaxy.webapps.base
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy.webapps.base.controller module
|
||||
-------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.base.controller
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
|
||||
@@ -25,12 +25,4 @@ galaxy.webapps.galaxy.buildapp module
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.webapps.galaxy.config\_watchers module
|
||||
---------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.galaxy.config_watchers
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
|
||||
|
||||
@@ -11,6 +11,7 @@ Subpackages
|
||||
|
||||
.. toctree::
|
||||
|
||||
galaxy.webapps.base
|
||||
galaxy.webapps.galaxy
|
||||
galaxy.webapps.reports
|
||||
galaxy.webapps.tool_shed
|
||||
|
||||
@@ -6,6 +6,13 @@ galaxy.webapps.tool\_shed.model.migrate package
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
Subpackages
|
||||
-----------
|
||||
|
||||
.. toctree::
|
||||
|
||||
galaxy.webapps.tool_shed.model.migrate.versions
|
||||
|
||||
Submodules
|
||||
----------
|
||||
|
||||
|
||||
@@ -0,0 +1,220 @@
|
||||
galaxy.webapps.tool\_shed.model.migrate.versions package
|
||||
========================================================
|
||||
|
||||
.. automodule:: galaxy.webapps.tool_shed.model.migrate.versions
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
Submodules
|
||||
----------
|
||||
|
||||
galaxy.webapps.tool\_shed.model.migrate.versions.0001\_initial\_tables module
|
||||
-----------------------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.tool_shed.model.migrate.versions.0001_initial_tables
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.webapps.tool\_shed.model.migrate.versions.0002\_add\_tool\_suite\_column module
|
||||
--------------------------------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.tool_shed.model.migrate.versions.0002_add_tool_suite_column
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.webapps.tool\_shed.model.migrate.versions.0003\_review\_and\_review\_association\_tables module
|
||||
------------------------------------------------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.tool_shed.model.migrate.versions.0003_review_and_review_association_tables
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.webapps.tool\_shed.model.migrate.versions.0004\_repository\_tables module
|
||||
--------------------------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.tool_shed.model.migrate.versions.0004_repository_tables
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.webapps.tool\_shed.model.migrate.versions.0005\_drop\_tool\_related\_tables module
|
||||
-----------------------------------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.tool_shed.model.migrate.versions.0005_drop_tool_related_tables
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.webapps.tool\_shed.model.migrate.versions.0006\_add\_email\_alerts\_column module
|
||||
----------------------------------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.tool_shed.model.migrate.versions.0006_add_email_alerts_column
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.webapps.tool\_shed.model.migrate.versions.0007\_add\_long\_description\_times\_downloaded\_columns module
|
||||
----------------------------------------------------------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.tool_shed.model.migrate.versions.0007_add_long_description_times_downloaded_columns
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.webapps.tool\_shed.model.migrate.versions.0008\_add\_repository\_metadata\_table module
|
||||
----------------------------------------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.tool_shed.model.migrate.versions.0008_add_repository_metadata_table
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.webapps.tool\_shed.model.migrate.versions.0009\_add\_malicious\_column module
|
||||
------------------------------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.tool_shed.model.migrate.versions.0009_add_malicious_column
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.webapps.tool\_shed.model.migrate.versions.0010\_add\_new\_repo\_alert\_column module
|
||||
-------------------------------------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.tool_shed.model.migrate.versions.0010_add_new_repo_alert_column
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.webapps.tool\_shed.model.migrate.versions.0011\_add\_tool\_versions\_column module
|
||||
-----------------------------------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.tool_shed.model.migrate.versions.0011_add_tool_versions_column
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.webapps.tool\_shed.model.migrate.versions.0012\_add\_downloadable\_column module
|
||||
---------------------------------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.tool_shed.model.migrate.versions.0012_add_downloadable_column
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.webapps.tool\_shed.model.migrate.versions.0013\_add\_review\_tables module
|
||||
---------------------------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.tool_shed.model.migrate.versions.0013_add_review_tables
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.webapps.tool\_shed.model.migrate.versions.0014\_add\_deprecated\_column module
|
||||
-------------------------------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.tool_shed.model.migrate.versions.0014_add_deprecated_column
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.webapps.tool\_shed.model.migrate.versions.0015\_add\_api\_keys\_table module
|
||||
-----------------------------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.tool_shed.model.migrate.versions.0015_add_api_keys_table
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.webapps.tool\_shed.model.migrate.versions.0016\_add\_do\_not\_test\_tools\_functionally\_correct\_errors\_columns module
|
||||
-------------------------------------------------------------------------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.tool_shed.model.migrate.versions.0016_add_do_not_test_tools_functionally_correct_errors_columns
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.webapps.tool\_shed.model.migrate.versions.0017\_add\_galaxy\_utility\_columns\_to\_repository\_metadata\_table module
|
||||
----------------------------------------------------------------------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.tool_shed.model.migrate.versions.0017_add_galaxy_utility_columns_to_repository_metadata_table
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.webapps.tool\_shed.model.migrate.versions.0018\_add\_repository\_metadata\_flag\_columns module
|
||||
------------------------------------------------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.tool_shed.model.migrate.versions.0018_add_repository_metadata_flag_columns
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.webapps.tool\_shed.model.migrate.versions.0019\_add\_skip\_tool\_test\_table\_and\_test\_install\_error\_column module
|
||||
-----------------------------------------------------------------------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.tool_shed.model.migrate.versions.0019_add_skip_tool_test_table_and_test_install_error_column
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.webapps.tool\_shed.model.migrate.versions.0020\_add\_repository\_type\_column module
|
||||
-------------------------------------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.tool_shed.model.migrate.versions.0020_add_repository_type_column
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.webapps.tool\_shed.model.migrate.versions.0021\_change\_repository\_type\_value module
|
||||
---------------------------------------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.tool_shed.model.migrate.versions.0021_change_repository_type_value
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.webapps.tool\_shed.model.migrate.versions.0022\_add\_repository\_admin\_roles module
|
||||
-------------------------------------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.tool_shed.model.migrate.versions.0022_add_repository_admin_roles
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.webapps.tool\_shed.model.migrate.versions.0023\_add\_repository\_url\_and\_hompeage\_url module
|
||||
------------------------------------------------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.tool_shed.model.migrate.versions.0023_add_repository_url_and_hompeage_url
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.webapps.tool\_shed.model.migrate.versions.0024\_password\_reset module
|
||||
-----------------------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.tool_shed.model.migrate.versions.0024_password_reset
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.webapps.tool\_shed.model.migrate.versions.0025\_session\_timeout module
|
||||
------------------------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.tool_shed.model.migrate.versions.0025_session_timeout
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
galaxy.webapps.tool\_shed.model.migrate.versions.0026\_add\_numeric\_revision\_column module
|
||||
--------------------------------------------------------------------------------------------
|
||||
|
||||
.. automodule:: galaxy.webapps.tool_shed.model.migrate.versions.0026_add_numeric_revision_column
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
|
||||
@@ -6,6 +6,13 @@ tool\_shed.galaxy\_install.migrate package
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
Subpackages
|
||||
-----------
|
||||
|
||||
.. toctree::
|
||||
|
||||
tool_shed.galaxy_install.migrate.versions
|
||||
|
||||
Submodules
|
||||
----------
|
||||
|
||||
|
||||
@@ -0,0 +1,108 @@
|
||||
tool\_shed.galaxy\_install.migrate.versions package
|
||||
===================================================
|
||||
|
||||
.. automodule:: tool_shed.galaxy_install.migrate.versions
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
Submodules
|
||||
----------
|
||||
|
||||
tool\_shed.galaxy\_install.migrate.versions.0001\_tools module
|
||||
--------------------------------------------------------------
|
||||
|
||||
.. automodule:: tool_shed.galaxy_install.migrate.versions.0001_tools
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
tool\_shed.galaxy\_install.migrate.versions.0002\_tools module
|
||||
--------------------------------------------------------------
|
||||
|
||||
.. automodule:: tool_shed.galaxy_install.migrate.versions.0002_tools
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
tool\_shed.galaxy\_install.migrate.versions.0003\_tools module
|
||||
--------------------------------------------------------------
|
||||
|
||||
.. automodule:: tool_shed.galaxy_install.migrate.versions.0003_tools
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
tool\_shed.galaxy\_install.migrate.versions.0004\_tools module
|
||||
--------------------------------------------------------------
|
||||
|
||||
.. automodule:: tool_shed.galaxy_install.migrate.versions.0004_tools
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
tool\_shed.galaxy\_install.migrate.versions.0005\_tools module
|
||||
--------------------------------------------------------------
|
||||
|
||||
.. automodule:: tool_shed.galaxy_install.migrate.versions.0005_tools
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
tool\_shed.galaxy\_install.migrate.versions.0006\_tools module
|
||||
--------------------------------------------------------------
|
||||
|
||||
.. automodule:: tool_shed.galaxy_install.migrate.versions.0006_tools
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
tool\_shed.galaxy\_install.migrate.versions.0007\_tools module
|
||||
--------------------------------------------------------------
|
||||
|
||||
.. automodule:: tool_shed.galaxy_install.migrate.versions.0007_tools
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
tool\_shed.galaxy\_install.migrate.versions.0008\_tools module
|
||||
--------------------------------------------------------------
|
||||
|
||||
.. automodule:: tool_shed.galaxy_install.migrate.versions.0008_tools
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
tool\_shed.galaxy\_install.migrate.versions.0009\_tools module
|
||||
--------------------------------------------------------------
|
||||
|
||||
.. automodule:: tool_shed.galaxy_install.migrate.versions.0009_tools
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
tool\_shed.galaxy\_install.migrate.versions.0010\_tools module
|
||||
--------------------------------------------------------------
|
||||
|
||||
.. automodule:: tool_shed.galaxy_install.migrate.versions.0010_tools
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
tool\_shed.galaxy\_install.migrate.versions.0011\_tools module
|
||||
--------------------------------------------------------------
|
||||
|
||||
.. automodule:: tool_shed.galaxy_install.migrate.versions.0011_tools
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
tool\_shed.galaxy\_install.migrate.versions.0012\_tools module
|
||||
--------------------------------------------------------------
|
||||
|
||||
.. automodule:: tool_shed.galaxy_install.migrate.versions.0012_tools
|
||||
:members:
|
||||
:undoc-members:
|
||||
:show-inheritance:
|
||||
|
||||
|
||||
Reference in New Issue
Block a user