mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-24 16:30:27 +08:00
Update Python dependencies
by running `make update-dependencies`.
This commit is contained in:
galaxybot
committed by
github-actions[bot]
github-actions[bot]
parent
9ff63f517d
commit
424b1024de
@@ -1,11 +1,11 @@
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# This file was autogenerated by uv via the following command:
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# uv export --frozen --no-annotate --no-hashes --only-group=dev
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aiocop==1.1.4
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aiocop==1.1.5
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aiohappyeyeballs==2.7.1
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aiohttp==3.14.1
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aiohttp==3.14.3
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aiosignal==1.4.0
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alabaster==1.0.0
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annotated-types==0.7.0
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annotated-types==0.8.0
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ase==3.29.0
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ast-serialize==0.6.0
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async-timeout==5.0.1 ; python_full_version < '3.11'
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@@ -20,16 +20,16 @@ boto3==1.43.46
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botocore==1.43.46
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build==1.5.0
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cachecontrol==0.14.4
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cachetools==7.1.4
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cachetools==7.1.6
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cattrs==26.1.0
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certifi==2026.6.17
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certifi==2026.7.22
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cffi==2.1.0 ; (implementation_name != 'pypy' and os_name == 'nt') or platform_python_implementation != 'PyPy'
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charset-normalizer==3.4.9
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click==8.4.2
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cloudbridge==4.3.0
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codespell==2.4.3
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colorama==0.4.6 ; os_name == 'nt' or sys_platform == 'win32'
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colorlog==6.11.0
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colorlog==6.12.0
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contourpy==1.3.2 ; python_full_version < '3.11'
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contourpy==1.3.3 ; python_full_version >= '3.11'
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coverage==7.15.2
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@@ -45,15 +45,15 @@ docutils==0.22.4 ; python_full_version >= '3.11'
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dogpile-cache==1.5.0
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enum-tools==0.12.0
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exceptiongroup==1.3.1 ; python_full_version < '3.11'
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filelock==3.30.3
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filelock==3.32.0
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fluent-logger==0.11.1
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fonttools==4.63.0
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frozenlist==1.8.0
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fsspec==2026.6.0
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galaxy-release-util==0.3.3
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gcsfs==2026.7.0
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google-api-core==2.32.0
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google-auth==2.56.0
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google-api-core==2.33.0
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google-auth==2.56.2
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google-auth-oauthlib==1.4.0
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google-cloud-core==2.6.0
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google-cloud-storage==3.13.0
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@@ -61,10 +61,10 @@ google-cloud-storage-control==1.12.0
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google-crc32c==1.8.0
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google-resumable-media==2.10.0
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googleapis-common-protos==1.75.0
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greenlet==3.5.3
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greenlet==3.5.4
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grpc-google-iam-v1==0.14.4
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grpcio==1.82.1
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grpcio-status==1.81.1
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grpcio==1.83.0
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grpcio-status==1.83.0
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h11==0.16.0
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html5rdf==1.2.1
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hvac==2.4.0
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@@ -121,15 +121,15 @@ pathspec==1.1.1
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pfzy==0.3.4
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pillow==12.3.0
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pkce==1.0.3
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platformdirs==4.10.1
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platformdirs==4.11.0
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playwright==1.61.0
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pluggy==1.6.0
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port-for==1.0.0
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prettytable==3.18.0
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prompt-toolkit==3.0.52
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propcache==0.5.2
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proto-plus==1.28.1
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protobuf==6.33.6
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proto-plus==1.28.2
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protobuf==7.35.1
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psutil==7.2.2 ; sys_platform != 'cygwin'
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psycopg==3.3.4
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pyasn1==0.6.4
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@@ -182,8 +182,8 @@ roman-numerals==4.1.0 ; python_full_version >= '3.11'
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rpds-py==0.30.0 ; python_full_version < '3.11'
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rpds-py==2026.6.3 ; python_full_version >= '3.11'
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ruamel-yaml==0.19.1
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rucio-clients==40.4.1
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s3transfer==0.19.1
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rucio-clients==41.0.0
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s3transfer==0.19.2
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schema-salad==8.9.20260417192335
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scipy==1.15.3 ; python_full_version < '3.11'
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scipy==1.17.1 ; python_full_version == '3.11.*'
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@@ -234,5 +234,5 @@ wcwidth==0.8.2
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websocket-client==1.9.0
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werkzeug==3.1.8
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wsproto==1.3.2
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yarl==1.24.2
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yarl==1.24.5
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zipp==4.1.0 ; python_full_version < '3.12'
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@@ -4,4 +4,4 @@ flake8-bugbear==25.11.29
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mccabe==0.7.0
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pycodestyle==2.14.0
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pyflakes==3.4.0
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ruff==0.15.22
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ruff==0.16.0
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@@ -7,14 +7,14 @@ aiofile==3.9.0 ; python_full_version < '3.11'
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aiofile==3.11.1 ; python_full_version >= '3.11'
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aiofiles==25.1.0
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aiohappyeyeballs==2.7.1
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aiohttp==3.14.1
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aiohttp==3.14.3
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aioitertools==0.13.0
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aiosignal==1.4.0
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alembic==1.18.5
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amqp==5.3.1
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annotated-doc==0.0.4
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annotated-types==0.7.0
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anthropic==0.117.0
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annotated-types==0.8.0
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anthropic==0.120.0
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anyio==4.14.2
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apispec==6.10.0
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appdirs==1.4.4
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@@ -40,10 +40,10 @@ boto==2.49.0
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botocore==1.43.46
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bx-python==0.14.0
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cachecontrol==0.14.4
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cachetools==7.1.4
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cachetools==7.1.6
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caio==0.9.25
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celery==5.6.3
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certifi==2026.6.17
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certifi==2026.7.22
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cffi==2.1.0 ; implementation_name == 'pypy' or platform_python_implementation != 'PyPy'
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charset-normalizer==3.4.9
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circus==0.19.0
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@@ -59,8 +59,8 @@ cryptography==49.0.0
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ct3==3.4.0.post5
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cwl-upgrader==1.2.15
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cwl-utils==0.42
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cwltool==3.2.20260413085819
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cyclopts==4.21.1
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cwltool==3.2.20260720092025
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cyclopts==4.22.2
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defusedxml==0.7.1
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deprecated==1.3.1
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dictobj==0.4
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@@ -76,36 +76,36 @@ email-validator==2.3.0
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et-xmlfile==2.0.0
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exceptiongroup==1.3.1
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executing==2.2.1
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fastapi==0.139.2
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fastapi==0.140.0
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fastmcp==3.4.4
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fastmcp-slim==3.4.4
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filelock==3.30.3
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filelock==3.32.0
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fissix==24.4.24
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frozenlist==1.8.0
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fs==2.4.16
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fsspec==2026.6.0
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future==1.0.0
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genai-prices==0.0.71
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google-api-core==2.32.0
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google-auth==2.56.0
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genai-prices==0.0.72
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google-api-core==2.33.0
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google-auth==2.56.2
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google-cloud-batch==0.22.1
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google-genai==2.11.0
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google-genai==2.14.0
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googleapis-common-protos==1.75.0
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gravity==1.2.3
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greenlet==3.5.3 ; platform_machine == 'AMD64' or platform_machine == 'WIN32' or platform_machine == 'aarch64' or platform_machine == 'amd64' or platform_machine == 'ppc64le' or platform_machine == 'win32' or platform_machine == 'x86_64'
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greenlet==3.5.4 ; platform_machine == 'AMD64' or platform_machine == 'WIN32' or platform_machine == 'aarch64' or platform_machine == 'amd64' or platform_machine == 'ppc64le' or platform_machine == 'win32' or platform_machine == 'x86_64'
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griffelib==2.1.0
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grpcio==1.82.1
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grpcio-status==1.81.1
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grpcio==1.83.0
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grpcio-status==1.83.0
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gunicorn==26.0.0
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gxformat2==0.27.0
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h11==0.16.0
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h5grove==4.0.0
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h5py==3.16.0
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httpcore==1.0.9
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httpcore2==2.7.0
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httpcore2==2.9.1
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httpx==0.28.1
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httpx-sse==0.4.3
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httpx2==2.7.0
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httpx2==2.9.1
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humanfriendly==10.0
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idna==3.18
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ijson==3.5.1
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@@ -122,7 +122,7 @@ jeepney==0.9.0 ; sys_platform == 'linux'
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jinja2==3.1.6
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jiter==0.16.0
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jmespath==1.1.0
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joserfc==1.7.3
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joserfc==1.7.4
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jsonref==1.1.0
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jsonschema==4.26.0
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jsonschema-path==0.5.0
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@@ -132,8 +132,8 @@ kombu==5.6.2
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lagom==2.7.7
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legacy-cgi==2.6.4 ; python_full_version >= '3.13'
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limits==5.8.0
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logfire==4.37.0
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logfire-api==4.37.0
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logfire==4.39.0
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logfire-api==4.39.0
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lxml==6.1.1
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mako==1.3.12
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markdown==3.10.2
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@@ -158,31 +158,31 @@ numpy==2.2.6 ; python_full_version < '3.11'
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numpy==2.4.6 ; python_full_version == '3.11.*'
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numpy==2.5.1 ; python_full_version >= '3.12'
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oauthlib==3.3.1
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openai==2.46.0
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openai==2.48.0
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openapi-pydantic==0.5.1
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openpyxl==3.1.5
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opentelemetry-api==1.42.1
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opentelemetry-exporter-otlp-proto-common==1.42.1
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opentelemetry-exporter-otlp-proto-http==1.42.1
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opentelemetry-instrumentation==0.63b1
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opentelemetry-instrumentation-httpx==0.63b1
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opentelemetry-proto==1.42.1
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opentelemetry-sdk==1.42.1
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opentelemetry-semantic-conventions==0.63b1
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opentelemetry-util-http==0.63b1
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opentelemetry-api==1.44.0
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opentelemetry-exporter-otlp-proto-common==1.44.0
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opentelemetry-exporter-otlp-proto-http==1.44.0
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opentelemetry-instrumentation==0.65b0
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opentelemetry-instrumentation-httpx==0.65b0
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opentelemetry-proto==1.44.0
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opentelemetry-sdk==1.44.0
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opentelemetry-semantic-conventions==0.65b0
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opentelemetry-util-http==0.65b0
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orjson==3.11.9
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packaging==26.2
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paramiko==5.0.0
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parsley==1.3
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paste==3.10.1
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pathable==0.6.0
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pebble==5.2.0
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pebble==5.2.1
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pillow==12.3.0
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platformdirs==4.10.1
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platformdirs==4.11.0
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prompt-toolkit==3.0.52
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propcache==0.5.2
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proto-plus==1.28.1
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protobuf==6.33.6
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proto-plus==1.28.2
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protobuf==7.35.1
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prov==1.5.1
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psutil==7.2.2
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pulsar-galaxy-lib==0.15.15
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@@ -193,12 +193,12 @@ pyasn1-modules==0.4.2
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pycparser==3.0 ; (implementation_name != 'PyPy' and platform_python_implementation != 'PyPy') or (implementation_name == 'pypy' and platform_python_implementation == 'PyPy')
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pycryptodome==3.23.0
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pydantic==2.13.4
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pydantic-ai==2.13.0
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pydantic-ai-slim==2.13.0
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pydantic-ai==2.18.0
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pydantic-ai-slim==2.18.0
|
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pydantic-core==2.46.4
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pydantic-evals==2.13.0
|
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pydantic-evals==2.18.0
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pydantic-extra-types==2.11.1
|
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pydantic-graph==2.13.0
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pydantic-graph==2.18.0
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pydantic-settings==2.14.2
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pydantic-tes==0.4.0
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pydicom==3.0.2
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@@ -228,7 +228,7 @@ pyzmq==27.1.0
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rdflib==7.6.0
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referencing==0.37.0
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refgenconf==0.13.1
|
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regex==2026.7.10
|
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regex==2026.7.19
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repoze-lru==0.8
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requests==2.34.2
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requests-oauthlib==2.0.0
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@@ -254,7 +254,7 @@ sortedcontainers==2.4.0
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spython==0.3.14
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sqlalchemy==2.0.51
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sqlparse==0.5.5
|
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sse-starlette==3.4.5
|
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sse-starlette==3.4.6
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starlette==1.3.1
|
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starlette-context==0.5.1
|
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supervisor==4.3.0
|
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@@ -268,7 +268,7 @@ tiktoken==0.13.0
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tinydb==4.8.2
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tomli==2.4.1 ; python_full_version < '3.11'
|
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tornado==6.5.7
|
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tqdm==4.69.0
|
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tqdm==4.69.1
|
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truststore==0.10.4
|
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tuspy==1.1.0
|
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tuspyserver==4.2.12
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@@ -290,6 +290,6 @@ websockets==16.1.1
|
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whoosh==2.7.4
|
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wrapt==2.2.2
|
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yacman==1.0.0
|
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yarl==1.24.2
|
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yarl==1.24.5
|
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zipp==4.1.0 ; python_full_version < '3.12'
|
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zipstream-new==1.1.8
|
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|
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@@ -1,10 +1,10 @@
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# This file was autogenerated by uv via the following command:
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# uv export --frozen --no-annotate --no-hashes --only-group=test
|
||||
aiocop==1.1.4
|
||||
aiocop==1.1.5
|
||||
aiohappyeyeballs==2.7.1
|
||||
aiohttp==3.14.1
|
||||
aiohttp==3.14.3
|
||||
aiosignal==1.4.0
|
||||
annotated-types==0.7.0
|
||||
annotated-types==0.8.0
|
||||
ase==3.29.0
|
||||
ast-serialize==0.6.0
|
||||
async-timeout==5.0.1 ; python_full_version < '3.11'
|
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@@ -15,15 +15,15 @@ backports-asyncio-runner==1.2.0 ; python_full_version < '3.11'
|
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boto3==1.43.46
|
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botocore==1.43.46
|
||||
cachecontrol==0.14.4
|
||||
cachetools==7.1.4
|
||||
cachetools==7.1.6
|
||||
cattrs==26.1.0
|
||||
certifi==2026.6.17
|
||||
certifi==2026.7.22
|
||||
cffi==2.1.0 ; (implementation_name != 'pypy' and os_name == 'nt') or platform_python_implementation != 'PyPy'
|
||||
charset-normalizer==3.4.9
|
||||
click==8.4.2
|
||||
cloudbridge==4.3.0
|
||||
colorama==0.4.6 ; sys_platform == 'win32'
|
||||
colorlog==6.11.0
|
||||
colorlog==6.12.0
|
||||
contourpy==1.3.2 ; python_full_version < '3.11'
|
||||
contourpy==1.3.3 ; python_full_version >= '3.11'
|
||||
coverage==7.15.2
|
||||
@@ -35,14 +35,14 @@ defusedxml==0.7.1
|
||||
dogpile-cache==1.5.0
|
||||
enum-tools==0.12.0
|
||||
exceptiongroup==1.3.1 ; python_full_version < '3.11'
|
||||
filelock==3.30.3
|
||||
filelock==3.32.0
|
||||
fluent-logger==0.11.1
|
||||
fonttools==4.63.0
|
||||
frozenlist==1.8.0
|
||||
fsspec==2026.6.0
|
||||
gcsfs==2026.7.0
|
||||
google-api-core==2.32.0
|
||||
google-auth==2.56.0
|
||||
google-api-core==2.33.0
|
||||
google-auth==2.56.2
|
||||
google-auth-oauthlib==1.4.0
|
||||
google-cloud-core==2.6.0
|
||||
google-cloud-storage==3.13.0
|
||||
@@ -50,10 +50,10 @@ google-cloud-storage-control==1.12.0
|
||||
google-crc32c==1.8.0
|
||||
google-resumable-media==2.10.0
|
||||
googleapis-common-protos==1.75.0
|
||||
greenlet==3.5.3
|
||||
greenlet==3.5.4
|
||||
grpc-google-iam-v1==0.14.4
|
||||
grpcio==1.82.1
|
||||
grpcio-status==1.81.1
|
||||
grpcio==1.83.0
|
||||
grpcio-status==1.83.0
|
||||
h11==0.16.0
|
||||
html5rdf==1.2.1
|
||||
hvac==2.4.0
|
||||
@@ -96,15 +96,15 @@ pathspec==1.1.1
|
||||
pfzy==0.3.4
|
||||
pillow==12.3.0
|
||||
pkce==1.0.3
|
||||
platformdirs==4.10.1
|
||||
platformdirs==4.11.0
|
||||
playwright==1.61.0
|
||||
pluggy==1.6.0
|
||||
port-for==1.0.0
|
||||
prettytable==3.18.0
|
||||
prompt-toolkit==3.0.52
|
||||
propcache==0.5.2
|
||||
proto-plus==1.28.1
|
||||
protobuf==6.33.6
|
||||
proto-plus==1.28.2
|
||||
protobuf==7.35.1
|
||||
psutil==7.2.2 ; sys_platform != 'cygwin'
|
||||
psycopg==3.3.4
|
||||
pyasn1==0.6.4
|
||||
@@ -147,8 +147,8 @@ roc-validator==0.11.2
|
||||
rpds-py==0.30.0 ; python_full_version < '3.11'
|
||||
rpds-py==2026.6.3 ; python_full_version >= '3.11'
|
||||
ruamel-yaml==0.19.1
|
||||
rucio-clients==40.4.1
|
||||
s3transfer==0.19.1
|
||||
rucio-clients==41.0.0
|
||||
s3transfer==0.19.2
|
||||
schema-salad==8.9.20260417192335
|
||||
scipy==1.15.3 ; python_full_version < '3.11'
|
||||
scipy==1.17.1 ; python_full_version == '3.11.*'
|
||||
@@ -185,5 +185,5 @@ wcwidth==0.8.2
|
||||
websocket-client==1.9.0
|
||||
werkzeug==3.1.8
|
||||
wsproto==1.3.2
|
||||
yarl==1.24.2
|
||||
yarl==1.24.5
|
||||
zipp==4.1.0 ; python_full_version < '3.12'
|
||||
|
||||
@@ -1,8 +1,8 @@
|
||||
# This file was autogenerated by uv via the following command:
|
||||
# uv export --frozen --no-annotate --no-hashes --only-group=typecheck
|
||||
annotated-types==0.7.0
|
||||
annotated-types==0.8.0
|
||||
ast-serialize==0.6.0
|
||||
boto3-stubs==1.43.51
|
||||
boto3-stubs==1.43.56
|
||||
botocore-stubs==1.43.14
|
||||
cffi==2.1.0 ; platform_python_implementation != 'PyPy'
|
||||
cryptography==49.0.0
|
||||
@@ -22,17 +22,17 @@ types-boto==2.49.18.20241019
|
||||
types-cachetools==7.0.0.20260713
|
||||
types-contextvars==2.4.7.3
|
||||
types-dataclasses==0.6.6
|
||||
types-docutils==0.22.3.20260712
|
||||
types-docutils==0.22.3.20260724
|
||||
types-html5lib==1.1.11.20260518
|
||||
types-markdown==3.10.2.20260712
|
||||
types-paramiko==5.0.0.20260617
|
||||
types-paramiko==5.0.0.20260724
|
||||
types-python-dateutil==2.9.0.20260716
|
||||
types-python-slugify==8.0.2.20240310
|
||||
types-pyyaml==6.0.12.20260518
|
||||
types-pyyaml==6.0.12.20260724
|
||||
types-requests==2.33.0.20260712
|
||||
types-s3transfer==0.16.0
|
||||
types-setuptools==83.0.0.20260716
|
||||
types-six==1.17.0.20260518
|
||||
types-setuptools==83.0.0.20260724
|
||||
types-six==1.17.0.20260724
|
||||
types-webencodings==0.5.0.20260408
|
||||
typing-extensions==4.16.0
|
||||
typing-inspection==0.4.2
|
||||
|
||||
Reference in New Issue
Block a user