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dcnorris
2014-04-14 16:43:49 -04:00
parent e5201f8632
commit 3bc8bd3dca
2 changed files with 14 additions and 14 deletions
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datatypes_conf.xml.sample
+1 -1
View File
@@ -99,7 +99,7 @@
<datatype extension="gtf" type="galaxy.datatypes.interval:Gtf" display_in_upload="true">
<converter file="gff_to_interval_index_converter.xml" target_datatype="interval_index"/>
<converter file="bed_gff_or_vcf_to_bigwig_converter.xml" target_datatype="bigwig"/>
<display file="igb/gtf.xml" />
<display file="igb/gtf.xml" />
</datatype>
<datatype extension="toolshed.gz" type="galaxy.datatypes.binary:Binary" mimetype="multipart/x-gzip" subclass="True" />
<datatype extension="h5" type="galaxy.datatypes.binary:Binary" mimetype="application/octet-stream" subclass="True" />
display_applications/igb/gtf.xml
+13 -13
View File
@@ -1,17 +1,17 @@
<display id="igb_gtf" version="1.0.0" name="display in IGB">
<link id="View" name="View">
<url>$bioviz</url>
<param type="data" name="gtf_file_for_name" viewable="False"/>
<param type="template" name="niceName" viewable="False" strip="True">
#import re
#set nm=$gtf_file_for_name.name
${re.sub('\W',"_",nm)}
</param>
<param type="data" name="gtf_file" url="${niceName}.gtf" strip_https="True" />
<param type="template" name="bioviz" strip="True" >
http://bioviz.org/igb/galaxy.html?version=${gtf_file.dbkey}&amp;loadresidues=false&amp;feature_url_0=${gtf_file.url}&amp;sym_name_0=${niceName}&amp;sym_method_0=${gtf_file.url}&amp;query_url=${gtf_file.url}&amp;server_url=galaxy
<link id="View" name="View">
<url>$bioviz</url>
<param type="data" name="gtf_file_for_name" viewable="False"/>
<param type="template" name="niceName" viewable="False" strip="True">
#import re
#set nm=$gtf_file_for_name.name
${re.sub('\W',"_",nm)}
</param>
</link>
<param type="data" name="gtf_file" url="${niceName}.gtf" strip_https="True" />
<param type="template" name="bioviz" strip="True" >
http://bioviz.org/igb/galaxy.html?version=${gtf_file.dbkey}&amp;loadresidues=false&amp;feature_url_0=${gtf_file.url}&amp;sym_name_0=${niceName}&amp;sym_method_0=${gtf_file.url}&amp;query_url=${gtf_file.url}&amp;server_url=galaxy
</param>
</link>
</display>