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Fix maf_utilities comparison

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mvdbeek
2018-09-05 14:22:00 +02:00
parent 6352a0ef3e
commit 36c74bbafa
1 changed files with 2 additions and 1 deletions
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lib/galaxy/tools/util/maf_utilities.py
+2 -1
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@@ -5,6 +5,7 @@ Provides wrappers and utilities for working with MAF files and alignments.
# Dan Blankenberg
from __future__ import print_function
import functools
import logging
import os
import resource
@@ -655,7 +656,7 @@ def sort_block_components_by_block(block1, block2):
# orders the components in block1 by the index of the component in block2
# block1 must be a subset of block2
# occurs in-place
return block1.components.sort(cmp=lambda x, y: block2.components.index(x) - block2.components.index(y))
return block1.components.sort(key=functools.cmp_to_key(lambda x, y: block2.components.index(x) - block2.components.index(y)))
def get_species_in_maf(maf_filename):