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Convert dbkeys from string to dict before checking for dbkey when including chrom info in jobs. Thanks Andrew Warren.

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This commit is contained in:
Jeremy Goecks
2012-03-22 09:58:42 -04:00
parent af77721f3e
commit 34c95acca0
1 changed files with 1 additions and 1 deletions
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lib/galaxy/tools/actions/__init__.py
+1 -1
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@@ -195,7 +195,7 @@ class DefaultToolAction( object ):
else:
# For custom builds, chrom info resides in converted dataset; for built-in builds, chrom info resides in tool-data/shared.
chrom_info = None
if trans.user and ( 'dbkeys' in trans.user.preferences ) and ( input_dbkey in trans.user.preferences[ 'dbkeys' ] ):
if trans.user and ( 'dbkeys' in trans.user.preferences ) and ( input_dbkey in from_json_string( trans.user.preferences[ 'dbkeys' ] ) ):
# Custom build.
custom_build_dict = from_json_string( trans.user.preferences[ 'dbkeys' ] )[ input_dbkey ]
if 'fasta' in custom_build_dict: