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fix bug in the test scripts of screencast D and E

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This commit is contained in:
Yi Zhang
2007-03-12 19:20:46 +00:00
parent 80d5d5ef19
commit 3492cdb664
2 changed files with 9 additions and 11 deletions
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test/functional/test_3D_Edit_Modify.py
+7 -7
View File
@@ -17,35 +17,35 @@ class EditModifyTests(TwillTestCase):
def test_11_Add_column_1(self):
"""3D_Edit_Modify: Add value 1 to cds"""
self.run_tool("addValue", exp="1", iterate="no")
self.run_tool("addValue", input=1, exp="1", iterate="no")
self.wait()
self.check_data('sc_3D_cds_add_1.bed', hid=2)
def test_12_Add_column_Mycds(self):
"""3D_Edit_Modify: Add value 'My.cds' to cds"""
self.delete_data(2)
self.run_tool("addValue", exp="My.cds", iterate="no")
self.run_tool("addValue", input=1, exp="My.cds", iterate="no")
self.wait()
self.check_data('sc_3D_cds_add_mycds.bed', hid=3)
def test_21_compute1(self):
"""3D_Edit_Modify: Compute expression c3-c2"""
self.delete_data(3)
self.run_tool('Add a column1', cond='c3-c2')
self.run_tool('Add a column1', input=1, cond='c3-c2')
self.wait()
self.check_data('sc_3D_cds_compute1.bed', hid=4)
def test_22_compute2(self):
"""3D_Edit_Modify: Compute expression(c3-c2)*100"""
self.delete_data(4)
self.run_tool('Add a column1', cond='(c3-c2)*100')
self.run_tool('Add a column1', input=1, cond='(c3-c2)*100')
self.wait()
self.check_data('sc_3D_cds_compute2.bed', hid=5)
def test_30_concatenate(self):
"""3D_Edit_Modify: Concatenate cd and cds"""
self.delete_data(5)
self.run_tool('cat1')
self.run_tool('cat1', input1=1, input2=1)
self.wait()
self.check_data('sc_3D_cds_concat.bed', hid=6)
@@ -59,14 +59,14 @@ class EditModifyTests(TwillTestCase):
def test_50_cut(self):
"""3D_Edit_Modify: cut c1, c2"""
self.delete_data(7)
self.run_tool('Cut1', columnList='c1,c2', delimiter='T')
self.run_tool('Cut1', input=1, columnList='c1,c2', delimiter='T')
self.wait()
self.check_data('sc_3D_cds_cut.bed', hid=8)
def test_60_paste(self):
"""3D_Edit_Modify: paste"""
self.delete_data(8)
self.run_tool('Paste1', delimiter='T')
self.run_tool('Paste1', input1=1, input2=1, delimiter='T')
self.wait()
self.check_data('sc_3D_cds_paste.bed', hid=9)
self.delete_data(9)
test/functional/test_3E_Filter.py
+2 -4
View File
@@ -9,8 +9,6 @@ class FilterTests(TwillTestCase):
def test_10_Genes(self):
"""3E_Filter: Get UCSC known genes first(encode)"""
self.clear_history()
self.run_tool('ucsc_proxy')
params = dict(
hgta_regionType="encode",
@@ -30,14 +28,14 @@ class FilterTests(TwillTestCase):
def test_21_Sort1(self):
"""3E_Filter: Sort on column one"""
self.delete_data(2)
self.run_tool("sort1", column="1", order="ASC", style="alpha")
self.run_tool("sort1", input=1, column="1", order="ASC", style="alpha")
self.wait()
self.check_data('sc_3E_sort.bed', hid=3)
def test_31_select(self):
"""3E_Filter: Select on the pattern AY143171"""
self.delete_data(3)
self.run_tool("Grep1", invert="false", pattern="AY143171")
self.run_tool("Grep1", input=1, invert="false", pattern="AY143171")
self.wait()
self.check_data('sc_3E_select.bed', hid=4)