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Include a file name export_info.xml to repository archives for repositories exported from the tool shed.

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This commit is contained in:
Greg Von Kuster
2013-08-05 16:45:16 -04:00
parent 9ba86a1438
commit 31d457cfc5
1 changed files with 20 additions and 2 deletions
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lib/tool_shed/util/export_util.py
+20 -2
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@@ -4,6 +4,8 @@ import shutil
import tarfile
import tempfile
import threading
from time import gmtime
from time import strftime
import tool_shed.util.shed_util_common as suc
from galaxy import eggs
from galaxy import web
@@ -97,9 +99,14 @@ def export_repository( trans, tool_shed_url, repository_id, repository_name, cha
elem = xml_util.create_element( 'repository', attributes=attributes, sub_elements=sub_elements )
exported_repository_registry.exported_repository_elems.append( elem )
shutil.rmtree( work_dir )
# Keep information about the export in a file name export_info.xml in the archive.
sub_elements = generate_export_elem( tool_shed_url, repository, changeset_revision, export_repository_dependencies, api )
export_elem = xml_util.create_element( 'export_info', attributes=None, sub_elements=sub_elements )
tmp_export_info = xml_util.create_and_write_tmp_file( export_elem, use_indent=True )
repositories_archive.add( tmp_export_info, arcname='export_info.xml' )
# Write the manifest, which must preserve the order in which the repositories should be imported.
tmp_xml_file = xml_util.create_and_write_tmp_file( exported_repository_registry.exported_repository_elems, use_indent=True )
repositories_archive.add( tmp_xml_file, arcname='manifest.xml' )
tmp_manifest = xml_util.create_and_write_tmp_file( exported_repository_registry.exported_repository_elems, use_indent=True )
repositories_archive.add( tmp_manifest, arcname='manifest.xml' )
except Exception, e:
log.exception( str( e ) )
finally:
@@ -161,6 +168,17 @@ def generate_repository_archive_filename( tool_shed_url, name, owner, changeset_
repositories_archive_filename = os.path.join( tmp_archive_dir, repositories_archive_filename )
return repositories_archive_filename
def generate_export_elem( tool_shed_url, repository, changeset_revision, export_repository_dependencies, api ):
sub_elements = odict()
sub_elements[ 'export_time' ] = strftime( '%a, %d %b %Y %H:%M:%S +0000', gmtime() )
sub_elements[ 'tool_shed' ] = str( tool_shed_url.rstrip( '/' ) )
sub_elements[ 'repository_name' ] = str( repository.name )
sub_elements[ 'repository_owner' ] = str( repository.user.username )
sub_elements[ 'changeset_revision' ] = str( changeset_revision )
sub_elements[ 'export_repository_dependencies' ] = str( export_repository_dependencies )
sub_elements[ 'exported_via_api' ] = str( api )
return sub_elements
def get_components_from_repo_info_dict( trans, repo_info_dict ):
"""
Return the repository and the associated latest installable changeset_revision (including updates) for the repository defined by the received