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https://github.com/galaxyproject/galaxy.git
synced 2026-11-06 00:12:05 +08:00
Remove duplication in test_parsing.py.
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@@ -250,9 +250,10 @@ class BaseLoaderTestCase(TestCase):
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def _get_tool_source(self, source_file_name=None, source_contents=None, macro_contents=None):
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if source_file_name is None:
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source_file_name = self.source_file_name
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source_file_name = self._get_source_file_name()
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if source_contents is None:
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source_contents = self.source_contents
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return get_test_tool_source(
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source_file_name,
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source_contents,
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@@ -260,6 +261,10 @@ class BaseLoaderTestCase(TestCase):
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self.temp_directory,
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)
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def _get_source_file_name(self) -> str:
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assert self.source_file_name
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return self.source_file_name
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class TestXmlExpressionLoader(BaseLoaderTestCase):
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source_file_name = "expression.xml"
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@@ -672,9 +677,16 @@ class TestBuildListToolLoader(BaseLoaderTestCase):
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assert tool_module[1] == "BuildListCollectionTool"
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class TestExpressionTestToolLoader(BaseLoaderTestCase):
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source_file_name = os.path.join(galaxy_directory(), "test/functional/tools/expression_null_handling_boolean.xml")
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source_contents = None
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class FunctionalTestToolTestCase(BaseLoaderTestCase):
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test_path: str
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source_contents: None
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def _get_source_file_name(self) -> str:
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return os.path.join(galaxy_directory(), "test/functional/tools", self.test_path)
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class TestExpressionTestToolLoader(FunctionalTestToolTestCase):
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test_path = "expression_null_handling_boolean.xml"
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def test_test(self):
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test_dicts = self._tool_source.parse_tests_to_dict()["tests"]
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@@ -701,9 +713,8 @@ class TestExpressionTestToolLoader(BaseLoaderTestCase):
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assert output0["attributes"]["object"] is None
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class TestDefaultDataTestToolLoader(BaseLoaderTestCase):
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source_file_name = os.path.join(galaxy_directory(), "test/functional/tools/for_workflows/cat_default.xml")
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source_contents = None
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class TestDefaultDataTestToolLoader(FunctionalTestToolTestCase):
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test_path = "for_workflows/cat_default.xml"
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def test_input_parsing(self):
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input_pages = self._tool_source.parse_input_pages()
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@@ -719,9 +730,8 @@ class TestDefaultDataTestToolLoader(BaseLoaderTestCase):
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assert default_dict["location"] == "https://raw.githubusercontent.com/galaxyproject/galaxy/dev/test-data/1.bed"
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class TestDefaultCollectionDataTestToolLoader(BaseLoaderTestCase):
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source_file_name = os.path.join(galaxy_directory(), "test/functional/tools/collection_paired_default.xml")
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source_contents = None
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class TestDefaultCollectionDataTestToolLoader(FunctionalTestToolTestCase):
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test_path = "collection_paired_default.xml"
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def test_input_parsing(self):
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input_pages = self._tool_source.parse_input_pages()
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@@ -745,9 +755,8 @@ class TestDefaultCollectionDataTestToolLoader(BaseLoaderTestCase):
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assert element1["location"] == "https://raw.githubusercontent.com/galaxyproject/galaxy/dev/test-data/1.fasta"
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class TestDefaultNestedCollectionDataTestToolLoader(BaseLoaderTestCase):
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source_file_name = os.path.join(galaxy_directory(), "test/functional/tools/collection_nested_default.xml")
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source_contents = None
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class TestDefaultNestedCollectionDataTestToolLoader(FunctionalTestToolTestCase):
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test_path = "collection_nested_default.xml"
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def test_input_parsing(self):
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input_pages = self._tool_source.parse_input_pages()
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@@ -774,9 +783,8 @@ class TestDefaultNestedCollectionDataTestToolLoader(BaseLoaderTestCase):
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assert elements01["identifier"] == "reverse"
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class TestExpressionOutputDataToolLoader(BaseLoaderTestCase):
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source_file_name = os.path.join(galaxy_directory(), "test/functional/tools/expression_pick_larger_file.xml")
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source_contents = None
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class TestExpressionOutputDataToolLoader(FunctionalTestToolTestCase):
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test_path = "expression_pick_larger_file.xml"
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def test_output_parsing(self):
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outputs, _ = self._tool_source.parse_outputs(None)
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@@ -808,9 +816,8 @@ class TestSpecialToolLoader(BaseLoaderTestCase):
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assert action[1] == "ExportHistoryToolAction"
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class TestCollection(BaseLoaderTestCase):
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source_file_name = os.path.join(galaxy_directory(), "test/functional/tools/collection_two_paired.xml")
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source_contents = None
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class TestCollection(FunctionalTestToolTestCase):
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test_path = "collection_two_paired.xml"
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def test_tests(self):
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tests_dict = self._tool_source.parse_tests_to_dict()
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@@ -822,27 +829,24 @@ class TestCollection(BaseLoaderTestCase):
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assert len(output_collections) == 0
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class TestCollectionOutputXml(BaseLoaderTestCase):
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source_file_name = os.path.join(galaxy_directory(), "test/functional/tools/collection_creates_pair.xml")
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source_contents = None
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class TestCollectionOutputXml(FunctionalTestToolTestCase):
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test_path = "collection_creates_pair.xml"
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def test_tests(self):
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outputs, output_collections = self._tool_source.parse_outputs(None)
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assert len(output_collections) == 1
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class TestCollectionOutputYaml(BaseLoaderTestCase):
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source_file_name = os.path.join(galaxy_directory(), "test/functional/tools/collection_creates_pair_y.yml")
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source_contents = None
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class TestCollectionOutputYaml(FunctionalTestToolTestCase):
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test_path = "collection_creates_pair_y.yml"
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def test_tests(self):
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outputs, output_collections = self._tool_source.parse_outputs(None)
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assert len(output_collections) == 1
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class TestEnvironmentVariables(BaseLoaderTestCase):
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source_file_name = os.path.join(galaxy_directory(), "test/functional/tools/environment_variables.xml")
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source_contents = None
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class TestEnvironmentVariables(FunctionalTestToolTestCase):
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test_path = "environment_variables.xml"
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def test_tests(self):
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tests_dict = self._tool_source.parse_tests_to_dict()
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@@ -850,9 +854,8 @@ class TestEnvironmentVariables(BaseLoaderTestCase):
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assert len(tests) == 1
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class TestExpectations(BaseLoaderTestCase):
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source_file_name = os.path.join(galaxy_directory(), "test/functional/tools/detect_errors.xml")
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source_contents = None
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class TestExpectations(FunctionalTestToolTestCase):
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test_path = "detect_errors.xml"
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def test_tests(self):
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tests_dict = self._tool_source.parse_tests_to_dict()
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@@ -863,9 +866,8 @@ class TestExpectations(BaseLoaderTestCase):
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assert len(test_0["stdout"]) == 2
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class TestExpectationsCommandVersion(BaseLoaderTestCase):
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source_file_name = os.path.join(galaxy_directory(), "test/functional/tools/job_properties.xml")
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source_contents = None
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class TestExpectationsCommandVersion(FunctionalTestToolTestCase):
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test_path = "job_properties.xml"
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def test_tests(self):
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tests_dict = self._tool_source.parse_tests_to_dict()
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@@ -875,9 +877,8 @@ class TestExpectationsCommandVersion(BaseLoaderTestCase):
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assert len(test_0["command_version"]) == 1
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class TestQcStdio(BaseLoaderTestCase):
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source_file_name = os.path.join(galaxy_directory(), "test/functional/tools/qc_stdout.xml")
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source_contents = None
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class TestQcStdio(FunctionalTestToolTestCase):
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test_path = "qc_stdout.xml"
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def test_tests(self):
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exit, regexes = self._tool_source.parse_stdio()
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