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amerkinized spelin' and removed copyright notices on some picard tool forms

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Ross Lazarus
2011-05-17 10:29:06 -04:00
parent 7401ae6439
commit 2e286b5c2d
7 changed files with 3 additions and 112 deletions
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tools/picard/rgPicardASMetrics.xml
-18
View File
@@ -183,24 +183,6 @@ This seems an awful strategy but unfortunately may be needed to run an analysis
Picard and Samtools go together. They are external to and completely independent of Galaxy. We acknowledge that all credit for
their methods and contribution are due to them.
Here, you can apply Picard tools through Galaxy which you may find much easier than through the native Picard command line interface.
-----
.. class:: infomark
**Copyright**
This Galaxy tool is a component of the rgenetics toolkit.
Written by and copyright Ross Lazarus, ross.lazarus at gmail etc, September 2010
All rgenetics artefacts are available licensed under the LGPL_
Other dependencies are licensed at the author's discretion - please see each individual package for details
.. _LGPL: http://www.gnu.org/copyleft/lesser.html
</help>
</tool>
tools/picard/rgPicardFixMate.xml
+1 -13
View File
@@ -101,7 +101,7 @@ or by providing comments through the report form that appears automatically
if a tool fails unexpectedly when you run it in Galaxy.
All the Picard tools are freely available and are documented
at http://picard.sourceforge.net/command-line-overview.shtml#CollectAlignmentSummaryMetrics
at http://picard.sourceforge.net/command-line-overview.shtml
Written by and copyright Ross Lazarus, ross.lazarus at gmail etc, September 2010
Code cleaned up and the ugliest hacks repaired by Raphael Lullis.
@@ -109,18 +109,6 @@ Kelly Vincent wrote the first version of picard_wrapper.py that now incorporates
It takes a village of programmers to wrap a picard tool
-----
.. class:: infomark
**Copyright**
This Galaxy tool is a component of the rgenetics toolkit.
All rgenetics artefacts are available licensed under the LGPL_
Other dependencies are licensed at the author's discretion - please see each individual package for details
.. _LGPL: http://www.gnu.org/copyleft/lesser.html
</help>
</tool>
tools/picard/rgPicardGCBiasMetrics.xml
-17
View File
@@ -162,22 +162,5 @@ Picard and Samtools go together.
They are external to and completely independent of Galaxy. We acknowledge that all credit for
their methods and contribution are due to them.
Here, you can apply Picard tools through Galaxy which might be easier than through the native Picard command line interface.
-----
.. class:: infomark
**Copyright**
This Galaxy tool is a component of the rgenetics toolkit.
Written by and copyright Ross Lazarus, ross.lazarus at gmail etc, September 2010
All rgenetics artefacts are available licensed under the LGPL_
Other dependencies are licensed at the author's discretion - please see each individual package for details
.. _LGPL: http://www.gnu.org/copyleft/lesser.html
</help>
</tool>
tools/picard/rgPicardHsMetrics.xml
+1 -14
View File
@@ -1,5 +1,5 @@
<tool name="Sam/bam Hybrid Selection Metrics:" id="PicardHsMetrics" version="0.01">
<description>For (eg exome) targetted data</description>
<description>For (eg exome) targeted data</description>
<command interpreter="python">
picard_wrapper.py -i "$input_file" -d "$html_file.files_path" -t "$html_file" --datatype "$input_file.ext"
@@ -139,19 +139,6 @@ This Galaxy tool uses part of Picard to report measures of hybridization selecti
aligned short read sequence data. Sequence data must be chosen from the sam/bam format files in your current history.
Target and bait files must be selected from the UCSC BED format in your current history.
-----
.. class:: infomark
**Copyright**
This is part of the rgenetics toolkit.
Written by Ross Lazarus 2010
All rgenetics artefacts are available licensed under the LGPL_
Other dependencies are licensed at the author's discretion - please see each individual package for details
.. _LGPL: http://www.gnu.org/copyleft/lesser.html
</help>
</tool>
tools/picard/rgPicardInsertSize.xml
+1 -16
View File
@@ -78,23 +78,8 @@ or by providing comments through the report form that appears automatically
if a tool fails unexpectedly when you run it in Galaxy.
All the Picard tools are freely available and are documented
at http://picard.sourceforge.net/command-line-overview.shtml#CollectInsertSizeMetrics
at http://picard.sourceforge.net/command-line-overview.shtml
Here, you can apply Picard tools through Galaxy which might be easier than through the native Picard command line interface.
-----
.. class:: infomark
**Copyright**
This Galaxy tool is a component of the rgenetics toolkit.
Written by and copyright Ross Lazarus, ross.lazarus at gmail etc, September 2010
Code cleaned up and the ugliest hacks repaired by Raphael Lullis
All rgenetics artifacts are available licensed under the LGPL
Other dependencies are licensed at the author's discretion - please see each individual package for details
</help>
</tool>
tools/picard/rgPicardLibComplexity.xml
-16
View File
@@ -121,22 +121,6 @@ if a tool fails unexpectedly when you run it in Galaxy.
All the Picard tools are freely available and are documented
at http://picard.sourceforge.net/command-line-overview.shtml#CollectInsertSizeMetrics
-----
.. class:: infomark
**Copyright**
This Galaxy tool is a component of the rgenetics toolkit.
Written by and copyright Ross Lazarus, ross.lazarus at gmail etc, September 2010
Code cleaned up and the ugliest hacks repaired by Raphael Lullis
All rgenetics artefacts are available licensed under the LGPL_
Other dependencies are licensed at the author's discretion - please see each individual package for details
.. _LGPL: http://www.gnu.org/copyleft/lesser.html
</help>
</tool>
tools/picard/rgPicardMarkDups.xml
-18
View File
@@ -120,24 +120,6 @@ if a tool fails unexpectedly when you run it in Galaxy.
All the Picard tools are freely available and are documented
at http://picard.sourceforge.net/command-line-overview.shtml#CollectInsertSizeMetrics
Here, you can apply Picard tools through Galaxy which might be easier than through the native Picard command line interface.
-----
.. class:: infomark
**Copyright**
This Galaxy tool is a component of the rgenetics toolkit.
Written by and copyright Ross Lazarus, ross.lazarus at gmail etc, September 2010
Code cleaned up and the ugliest hacks repaired by Raphael Lullis
All rgenetics artifacts are available licensed under the LGPL_
Other dependencies are licensed at the author's discretion - please see each individual package for details
.. _LGPL: http://www.gnu.org/copyleft/lesser.html
</help>
</tool>