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Enhance the tool shed's api to deliver repository dependencies defined for a specific repository revision.

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This commit is contained in:
Greg Von Kuster
2013-12-19 13:42:45 -05:00
parent 5beb5bed48
commit 2d0d4a5cf4
2 changed files with 47 additions and 1 deletions
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lib/galaxy/webapps/tool_shed/api/repository_revisions.py
+45
View File
@@ -9,6 +9,11 @@ from galaxy.web.base.controller import BaseAPIController, HTTPBadRequest
from tool_shed.util import export_util
import tool_shed.util.shed_util_common as suc
from galaxy import eggs
eggs.require( 'mercurial' )
from mercurial import hg
log = logging.getLogger( __name__ )
@@ -65,6 +70,46 @@ class RepositoryRevisionsController( BaseAPIController ):
trans.response.status = 500
return message
@web.expose_api_anonymous
def repository_dependencies( self, trans, id, **kwd ):
"""
GET /api/repository_revisions/{encoded repository_metadata id}/repository_dependencies
Displays information about a repository_metadata record in the Tool Shed.
:param id: the encoded id of the `RepositoryMetadata` object
"""
# Example URL: http://localhost:9009/api/repository_revisions/repository_dependencies/bb125606ff9ea620
repository_dependencies_dicts = []
try:
repository_metadata = metadata_util.get_repository_metadata_by_id( trans, id )
metadata = repository_metadata.metadata
if metadata and 'repository_dependencies' in metadata:
rd_tups = metadata[ 'repository_dependencies' ][ 'repository_dependencies' ]
for rd_tup in rd_tups:
tool_shed, name, owner, changeset_revision = rd_tup[ 0:4 ]
repository_dependencies_dict = dict( tool_shed=tool_shed,
name=name,
owner=owner,
changeset_revision=changeset_revision )
rd = suc.get_repository_by_name_and_owner( trans.app, name, owner )
encoded_rd_id = trans.security.encode_id( rd.id )
rd_repository_metadata = suc.get_repository_metadata_by_changeset_revision( trans,
encoded_rd_id,
changeset_revision )
if rd_repository_metadata is None:
repo = hg.repository( suc.get_configured_ui(), repository.repo_path( trans.app ) )
rd_repository_metadata = suc.get_next_downloadable_changeset_revision( repository, repo, changeset_revision )
repository_dependencies_dict[ 'url' ] = web.url_for( controller='repository_revisions',
action='show',
id=trans.security.encode_id( rd_repository_metadata.id ) )
repository_dependencies_dicts.append( repository_dependencies_dict )
return repository_dependencies_dicts
except Exception, e:
message = "Error in the Tool Shed repository_revisions API in repository_dependencies: %s" % str( e )
log.error( message, exc_info=True )
trans.response.status = 500
return message
@web.expose_api_anonymous
def index( self, trans, **kwd ):
"""
lib/galaxy/webapps/tool_shed/buildapp.py
+2 -1
View File
@@ -94,7 +94,8 @@ def app_factory( global_conf, **kwargs ):
parent_resources=dict( member_name='repository', collection_name='repositories' ) )
webapp.mapper.resource( 'repository_revision',
'repository_revisions',
member={ 'export' : 'POST' },
member={ 'repository_dependencies' : 'GET',
'export' : 'POST' },
controller='repository_revisions',
name_prefix='repository_revision_',
path_prefix='/api',