One more change missed in my rebase.

2026-09-24 16:30:27 +08:00 · 2015-03-12 23:36:25 -04:00
parent c0ccff7dda
commit 2b6c2a6793
1 changed files with 3 additions and 1 deletions
@@ -2,6 +2,7 @@ from __init__ import ToolAction
 from galaxy.datatypes.metadata import JobExternalOutputMetadataWrapper
 from galaxy.util.odict import odict
 from galaxy.util.json import dumps
+from galaxy.jobs.datasets import DatasetPath

 import logging
 log = logging.getLogger( __name__ )
@@ -65,13 +66,14 @@ class SetMetadataToolAction( ToolAction ):
        #add parameters to job_parameter table
        # Store original dataset state, so we can restore it. A separate table might be better (no chance of 'losing' the original state)?
        incoming[ '__ORIGINAL_DATASET_STATE__' ] = dataset.state
+        input_paths = [DatasetPath( dataset.id, real_path=dataset.file_name, mutable=False )]
        external_metadata_wrapper = JobExternalOutputMetadataWrapper( job )
        cmd_line = external_metadata_wrapper.setup_external_metadata( dataset,
                                                                      sa_session,
                                                                      exec_dir = None,
                                                                      tmp_dir = app.config.new_file_path,
                                                                      dataset_files_path = app.model.Dataset.file_path,
-                                                                      output_fnames = None,
+                                                                      output_fnames = input_paths,
                                                                      config_root = app.config.root,
                                                                      config_file = app.config.config_file,
                                                                      datatypes_config = app.datatypes_registry.integrated_datatypes_configs,