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Add missing requirement and fix incorrect help text in extract sequence tool

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This commit is contained in:
Peter Cock
2011-08-12 10:33:26 +01:00
parent 8f35ed245f
commit 29bc117ac1
1 changed files with 5 additions and 2 deletions
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tools/extract/extract_genomic_dna.xml
+5 -2
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@@ -1,4 +1,4 @@
<tool id="Extract genomic DNA 1" name="Extract Genomic DNA" version="2.2.1">
<tool id="Extract genomic DNA 1" name="Extract Genomic DNA" version="2.2.2">
<description>using coordinates from assembled/unassembled genomes</description>
<command interpreter="python">
extract_genomic_dna.py $input $out_file1 -o $out_format -d $dbkey
@@ -51,6 +51,9 @@
</change_format>
</data>
</outputs>
<requirements>
<requirement type="binary">faToTwoBit</requirement>
</requirements>
<tests>
<test>
<param name="input" value="1.bed" dbkey="hg17" ftype="bed" />
@@ -110,7 +113,7 @@
.. class:: warningmark
This tool requires tabular formatted data. If your data is not TAB delimited, use *Text Manipulation-&gt;Convert*.
This tool requires interval or gff (special tabular formatted data). If your data is not TAB delimited, first use *Text Manipulation-&gt;Convert*.
.. class:: warningmark