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Remove more unused containers.

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This commit is contained in:
John Chilton
2022-10-17 16:09:55 -04:00
parent 8e6fc9dcc7
commit 25e830fa81
2 changed files with 0 additions and 42 deletions
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lib/tool_shed/galaxy_install/dependency_display.py
-14
View File
@@ -287,16 +287,6 @@ class DependencyDisplayer:
)
installed_tool_dependencies = repository_installed_tool_dependencies
missing_tool_dependencies = repository_missing_tool_dependencies
# Handle valid tools.
valid_tools = metadata.get("tools", None)
# Handle Data Managers
valid_data_managers = None
invalid_data_managers = None
data_managers_errors = None
if "data_manager" in metadata:
valid_data_managers = metadata["data_manager"].get("data_managers", None)
invalid_data_managers = metadata["data_manager"].get("invalid_data_managers", None)
data_managers_errors = metadata["data_manager"].get("messages", None)
gucm = GalaxyUtilityContainerManager(self.app)
containers_dict = gucm.build_repository_containers(
repository=repository,
@@ -304,10 +294,6 @@ class DependencyDisplayer:
missing_tool_dependencies=missing_tool_dependencies,
repository_dependencies=installed_repository_dependencies,
tool_dependencies=installed_tool_dependencies,
valid_tools=valid_tools,
valid_data_managers=valid_data_managers,
invalid_data_managers=invalid_data_managers,
data_managers_errors=data_managers_errors,
new_install=False,
reinstalling=False,
)
lib/tool_shed/galaxy_install/utility_containers/__init__.py
-28
View File
@@ -16,10 +16,6 @@ class GalaxyUtilityContainerManager(utility_container_manager.UtilityContainerMa
missing_tool_dependencies,
repository_dependencies,
tool_dependencies,
valid_tools,
valid_data_managers,
invalid_data_managers,
data_managers_errors,
new_install=False,
reinstalling=False,
):
@@ -34,10 +30,6 @@ class GalaxyUtilityContainerManager(utility_container_manager.UtilityContainerMa
# Some of the tool dependency folders will include links to display tool dependency information, and
# some of these links require the repository id. However we need to be careful because sometimes the
# repository object is None.
if repository:
changeset_revision = repository.changeset_revision
else:
changeset_revision = None
try:
folder_id = 0
# Installed repository dependencies container.
@@ -87,26 +79,6 @@ class GalaxyUtilityContainerManager(utility_container_manager.UtilityContainerMa
reinstalling=reinstalling,
)
containers_dict["missing_tool_dependencies"] = missing_tool_dependencies_root_folder
# Valid tools container.
if valid_tools:
folder_id, valid_tools_root_folder = self.build_tools_folder(
folder_id, valid_tools, repository, changeset_revision, label="Valid tools"
)
containers_dict["valid_tools"] = valid_tools_root_folder
# Workflows container.
if valid_data_managers:
folder_id, valid_data_managers_root_folder = self.build_data_managers_folder(
folder_id=folder_id, data_managers=valid_data_managers, label="Valid Data Managers"
)
containers_dict["valid_data_managers"] = valid_data_managers_root_folder
if invalid_data_managers or data_managers_errors:
folder_id, invalid_data_managers_root_folder = self.build_invalid_data_managers_folder(
folder_id=folder_id,
data_managers=invalid_data_managers,
error_messages=data_managers_errors,
label="Invalid Data Managers",
)
containers_dict["invalid_data_managers"] = invalid_data_managers_root_folder
except Exception as e:
log.debug(f"Exception in build_repository_containers: {str(e)}")
return containers_dict