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Fix tabular_to_dbnsfp dependency, move out of GALAXY_LIB_TOOLS

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mvdbeek
2020-02-19 11:32:33 +01:00
parent 8e7c7915ba
commit 22d5832256
2 changed files with 2 additions and 3 deletions
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lib/galaxy/datatypes/converters/tabular_to_dbnsfp.xml
+1 -1
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@@ -1,7 +1,7 @@
<tool id="tabular_to_dbnsfp" name="Convert tabular to dbnsfp" version="1.0.1" profile="16.04">
<description></description>
<requirements>
<requirement type="package" version="3.7">python</requirement>
<requirement type="package" version="0.15.4">pysam</requirement>
</requirements>
<command>python '$__tool_directory__/tabular_to_dbnsfp.py' '$input' '$dbnsfp.extra_files_path/dbNSFP.gz'</command>
<inputs>
lib/galaxy/tools/__init__.py
+1 -2
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@@ -159,8 +159,6 @@ GALAXY_LIB_TOOLS_UNVERSIONED = [
"substitutions1",
"find_diag_hits",
"cufflinks",
# Tools improperly migrated to the tool shed (iuc)
"tabular_to_dbnsfp",
# Tools improperly migrated using Galaxy (from shed other)
"column_join",
"gd_coverage_distributions", # Genome Diversity tools from miller-lab
@@ -189,6 +187,7 @@ GALAXY_LIB_TOOLS_VERSIONED = {
"aggregate_scores_in_intervals2": packaging.version.parse("1.1.4"),
"CONVERTER_fastq_to_fqtoc0": packaging.version.parse("1.0.1"),
"CONVERTER_tar_to_directory": packaging.version.parse("1.0.1"),
"tabular_to_dbnsfp": packaging.version.parse("1.0.1"),
}