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Allow execution of tool data deletion test case.

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It ultimately needs to be an integration test since it modifies files under git control as is, but it can be hacked around for now to test this functionality.

GALAXY_TEST_INCLUDE_API_CONFIG_MOD_TESTS=1 pytest -s lib/galaxy_test/api/test_tool_data.py::AdminToolDataApiTestCase
This commit is contained in:
John Chilton
2021-01-19 19:30:46 +01:00
committed by davelopez
parent feab24415b
commit 22aad6e817
1 changed files with 39 additions and 26 deletions
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lib/galaxy_test/api/test_tool_data.py
+39 -26
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@@ -1,8 +1,14 @@
""" Tests for the tool data API.
"""
import json
import operator
import os
import time
from requests import delete
from galaxy_test.base.populators import DatasetPopulator
from ._framework import ApiTestCase
@@ -81,32 +87,39 @@ class ToolDataApiTestCase(ApiTestCase):
delete_response = self._delete("tool_data/testbeta", data=payload, admin=True)
self._assert_status_code_is(delete_response, 400)
# Following test case rendered invalid by the fix in
# https://github.com/galaxyproject/galaxy/commit/48f77dc742acf01ddbafafcc4634e69378f1f020#diff-bfb557a99c1f7d646d4968d8d680b885R154.
# TODO: Restore the test case when test framework allows actions from
# admin users.
# def test_delete_entry(self):
# show_response = self._get( "tool_data/testbeta", admin=True )
# original_count = len(show_response.json()["fields"])
class AdminToolDataApiTestCase(ApiTestCase):
require_admin_user = True
# dataset_populator = DatasetPopulator( self.galaxy_interactor )
# history_id = dataset_populator.new_history()
# payload = dataset_populator.run_tool_payload(
# tool_id="data_manager",
# inputs={"ignored_value": "moo"},
# history_id=history_id,
# )
# create_response = self._post( "tools", data=payload )
# self._assert_status_code_is( create_response, 200 )
# dataset_populator.wait_for_history( history_id, assert_ok=True )
# show_response = self._get( "tool_data/testbeta", admin=True )
# updated_fields = show_response.json()["fields"]
# assert len(updated_fields) == original_count + 1
# field0 = updated_fields[0]
# url = self._api_url( "tool_data/testbeta?key=%s" % self.galaxy_interactor.master_api_key )
# delete( url, data=json.dumps({"values": "\t".join(field0)}) )
def test_delete_entry(self):
if "GALAXY_TEST_INCLUDE_API_CONFIG_MOD_TESTS" not in os.environ:
# TODO: create an integration test that copies test/functional/tool-data
# to a temp directory and points Galaxy at that.
self.skipTest("Skipping test that would mutate server config state")
# show_response = self._get( "tool_data/testbeta", admin=True )
# updated_fields = show_response.json()["fields"]
# assert len(updated_fields) == original_count
show_response = self._get("tool_data/testbeta")
original_count = len(show_response.json()["fields"])
dataset_populator = DatasetPopulator(self.galaxy_interactor)
history_id = dataset_populator.new_history()
payload = dataset_populator.run_tool_payload(
tool_id="data_manager",
inputs={"ignored_value": "moo"},
history_id=history_id,
)
create_response = self._post("tools", data=payload)
self._assert_status_code_is(create_response, 200)
dataset_populator.wait_for_history(history_id, assert_ok=True)
time.sleep(2)
show_response = self._get("tool_data/testbeta")
updated_fields = show_response.json()["fields"]
self.assertEquals(len(updated_fields), original_count + 1)
field0 = updated_fields[0]
url = self._api_url("tool_data/testbeta?key=%s" % self.galaxy_interactor.api_key)
delete_response = delete(url, data=json.dumps({"values": "\t".join(field0)}))
delete_response.raise_for_status()
time.sleep(2)
show_response = self._get("tool_data/testbeta")
show_response.raise_for_status()
updated_fields = show_response.json()["fields"]
assert len(updated_fields) == original_count