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Fix for tool configs that do not include a command tag.

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This commit is contained in:
Greg Von Kuster
2011-07-21 13:44:45 -04:00
parent a358d40de1
commit 225427a052
1 changed files with 4 additions and 4 deletions
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lib/galaxy/tools/__init__.py
+4 -4
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@@ -374,15 +374,15 @@ class Tool:
self.input_translator = root.find( "request_param_translation" )
if self.input_translator:
self.input_translator = ToolInputTranslator.from_element( self.input_translator )
# Command line (template). Optional for tools that do not invoke a
# local program
# Command line (template). Optional for tools that do not invoke a local program
command = root.find("command")
if command is not None and command.text is not None:
self.command = command.text.lstrip() # get rid of leading whitespace
# Must pre-pend this AFTER processing the cheetah command template
self.interpreter = command.get( "interpreter", None )
else:
self.command = ''
# Must pre-pend this AFTER processing the cheetah command template
self.interpreter = command.get("interpreter", None)
self.interpreter = None
# Parameters used to build URL for redirection to external app
redirect_url_params = root.find( "redirect_url_params" )
if redirect_url_params is not None and redirect_url_params.text is not None: