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add generated sample

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Martin Cech
2018-01-24 09:47:22 -05:00
parent 68b3fcec27
commit 22489a721e
1 changed files with 16 additions and 13 deletions
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config/galaxy.yml.sample
+16 -13
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@@ -1511,11 +1511,14 @@ galaxy:
# is 5MB, but as low as 1MB seems to be a reasonable size.
#max_metadata_value_size: 5242880
# If (for example) you run on a cluster and your datasets (by default,
# database/files/) are mounted read-only, this option will override
# tool output paths to write outputs to the working directory instead,
# and the job manager will move the outputs to their proper place in
# the dataset directory on the Galaxy server after the job completes.
# This option will override tool output paths to write outputs to the
# job working directory (instead of to the file_path) and the job
# manager will move the outputs to their proper place in the dataset
# directory on the Galaxy server after the job completes. This is
# necessary (for example) if jobs run on a cluster and datasets can
# not be created by the user running the jobs (e.g. if the filesystem
# is mounted read-only or the jobs are run by a different user than
# the galaxy user).
#outputs_to_working_directory: false
# If your network filesystem's caching prevents the Galaxy server from
@@ -1547,27 +1550,27 @@ galaxy:
#cleanup_job: always
# When running DRMAA jobs as the Galaxy user
# (https://galaxyproject.org/admin/config/performance/cluster
# /#submitting-jobs-as-the-real-user) this script is used to run the
# (https://docs.galaxyproject.org/en/latest/admin/cluster.html
# #submitting-jobs-as-the-real-user) this script is used to run the
# job script Galaxy generates for a tool execution.
#drmaa_external_runjob_script: sudo -E scripts/drmaa_external_runner.py --assign_all_groups
# When running DRMAA jobs as the Galaxy user
# (https://galaxyproject.org/admin/config/performance/cluster
# /#submitting-jobs-as-the-real-user) this script is used to kill such
# (https://docs.galaxyproject.org/en/latest/admin/cluster.html
# #submitting-jobs-as-the-real-user) this script is used to kill such
# jobs by Galaxy (e.g. if the user cancels the job).
#drmaa_external_killjob_script: sudo -E scripts/drmaa_external_killer.py
# When running DRMAA jobs as the Galaxy user
# (https://galaxyproject.org/admin/config/performance/cluster
# /#submitting-jobs-as-the-real-user) this script is used transfer
# (https://docs.galaxyproject.org/en/latest/admin/cluster.html
# #submitting-jobs-as-the-real-user) this script is used transfer
# permissions back and forth between the Galaxy user and the user that
# is running the job.
#external_chown_script: sudo -E scripts/external_chown_script.py
# When running DRMAA jobs as the Galaxy user
# (https://galaxyproject.org/admin/config/performance/cluster
# /#submitting-jobs-as-the-real-user) Galaxy can extract the user name
# (https://docs.galaxyproject.org/en/latest/admin/cluster.html
# #submitting-jobs-as-the-real-user) Galaxy can extract the user name
# from the email address (actually the local-part before the @) or the
# username which are both stored in the Galaxy data base. The latter
# option is particularly useful for installations that get the