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Merge pull request #4284 from bgruening/enhancement_phylocanvas

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Enhancement for Phylocanvas plugin
This commit is contained in:
Aysam Guerler
2017-07-06 08:26:09 -04:00
committed by GitHub
parent 9a65d9b2ab 065ab584c7
commit 1ecaa06987
8 changed files with 92 additions and 61 deletions
Download Patch File Download Diff File Expand all files Collapse all files
config/plugins/visualizations/charts/static/repository/build/biojs_phylocanvas.js
+8
View File
@@ -73,6 +73,14 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
tree.setNodeSize( node_size );
tree.setTextSize( text_size );
tree.lineWidth = line_width;
// Show bootstrap confidence levels
tree.showBootstrap = settings.get( 'show_bootstrap' ) === "true" ? true : false;
tree.showInternalNodeLabels = tree.showBootstrap;
// Update font and color for internal nodel labels
tree.internalLabelStyle.colour = tree.branchColour;
tree.internalLabelStyle.font = tree.font;
tree.internalLabelStyle.textSize = tree.textSize;
// Register click event on tree
tree.on( 'click', function ( e ) {
var node = tree.getNodeAtMousePosition( e );
config/plugins/visualizations/charts/static/repository/build/biojs_phylocanvas.js.map
+1 -1
View File
File diff suppressed because one or more lines are too long
config/plugins/visualizations/charts/static/repository/build/registry.js
+63 -57
View File
@@ -44,18 +44,15 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
/* 0 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [], __WEBPACK_AMD_DEFINE_RESULT__ = function() { return {nvd3_bar:__webpack_require__( 6 ), nvd3_bar_horizontal:__webpack_require__( 9 ), nvd3_bar_horizontal_stacked:__webpack_require__( 10 ), nvd3_bar_stacked:__webpack_require__( 11 ), nvd3_line:__webpack_require__( 12 ), nvd3_line_focus:__webpack_require__( 13 ), nvd3_scatter:__webpack_require__( 14 ), nvd3_stackedarea:__webpack_require__( 15 ), nvd3_stackedarea_full:__webpack_require__( 16 ), nvd3_stackedarea_stream:__webpack_require__( 17 ), nvd3_pie:__webpack_require__( 18 ), nvd3_histogram:__webpack_require__( 19 ), nvd3_histogram_discrete:__webpack_require__( 20 ), jqplot_bar:__webpack_require__( 21 ), jqplot_boxplot:__webpack_require__( 23 ), jqplot_histogram_discrete:__webpack_require__( 24 ), jqplot_line:__webpack_require__( 25 ), jqplot_scatter:__webpack_require__( 26 ), biojs_msa:__webpack_require__( 27 ), biojs_drawrnajs:__webpack_require__( 28 ), biojs_phylocanvas:__webpack_require__( 29 ), others_example:__webpack_require__( 30 ), others_heatmap:__webpack_require__( 31 ), others_heatmap_cluster:__webpack_require__( 32 ), cytoscape_viewer:__webpack_require__( 33 ), pv_viewer:__webpack_require__( 34 ), benfred_venn:__webpack_require__( 35 ), ngl_viewer:__webpack_require__( 36 ),} }.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [], __WEBPACK_AMD_DEFINE_RESULT__ = function() { return {nvd3_bar:__webpack_require__( 3 ), nvd3_bar_horizontal:__webpack_require__( 6 ), nvd3_bar_horizontal_stacked:__webpack_require__( 7 ), nvd3_bar_stacked:__webpack_require__( 8 ), nvd3_line:__webpack_require__( 9 ), nvd3_line_focus:__webpack_require__( 10 ), nvd3_scatter:__webpack_require__( 11 ), nvd3_stackedarea:__webpack_require__( 12 ), nvd3_stackedarea_full:__webpack_require__( 13 ), nvd3_stackedarea_stream:__webpack_require__( 14 ), nvd3_pie:__webpack_require__( 15 ), nvd3_histogram:__webpack_require__( 16 ), nvd3_histogram_discrete:__webpack_require__( 17 ), jqplot_bar:__webpack_require__( 18 ), jqplot_boxplot:__webpack_require__( 20 ), jqplot_histogram_discrete:__webpack_require__( 21 ), jqplot_line:__webpack_require__( 22 ), jqplot_scatter:__webpack_require__( 23 ), biojs_msa:__webpack_require__( 24 ), biojs_drawrnajs:__webpack_require__( 25 ), biojs_phylocanvas:__webpack_require__( 26 ), others_example:__webpack_require__( 27 ), others_heatmap:__webpack_require__( 28 ), others_heatmap_cluster:__webpack_require__( 29 ), cytoscape_viewer:__webpack_require__( 30 ), pv_viewer:__webpack_require__( 31 ), benfred_venn:__webpack_require__( 32 ), ngl_viewer:__webpack_require__( 33 ),} }.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 1 */,
/* 2 */,
/* 3 */,
/* 4 */,
/* 5 */,
/* 6 */
/* 3 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(7) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(4) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
return $.extend(true, {}, nvd3_config, {
title : 'Bar diagram',
description : 'Renders a regular bar diagram using NVD3 hosted at http://www.nvd3.org.',
@@ -76,10 +73,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 7 */
/* 4 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(8) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(5) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
return $.extend( true, {}, default_config, {
title : '',
library : 'NVD3',
@@ -102,7 +99,7 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 8 */
/* 5 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [], __WEBPACK_AMD_DEFINE_RESULT__ = function() {
@@ -186,10 +183,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 9 */
/* 6 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(7) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(4) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
return $.extend( true, {}, nvd3_config, {
title : 'Horizontal',
description : 'Renders a horizontal bar diagram using NVD3 hosted at http://www.nvd3.org.',
@@ -210,10 +207,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 10 */
/* 7 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(7) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(4) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
return $.extend( true, {}, nvd3_config, {
title : 'Stacked horizontal',
description : 'Renders a stacked horizontal bar diagram using NVD3 hosted at http://www.nvd3.org.',
@@ -235,10 +232,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 11 */
/* 8 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(7) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(4) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
return $.extend( true, {}, nvd3_config, {
title : 'Stacked',
description : 'Renders a stacked bar diagram using NVD3 hosted at http://www.nvd3.org.',
@@ -260,10 +257,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 12 */
/* 9 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(7) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(4) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
return $.extend( true, {}, nvd3_config, {
title : 'Line chart',
description : 'Renders a line chart using NVD3 hosted at http://www.nvd3.org.',
@@ -285,10 +282,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 13 */
/* 10 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(7) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(4) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
return $.extend( true, {}, nvd3_config, {
title : 'Line with focus',
description : 'Renders a line chart with focus panel using NVD3 hosted at http://www.nvd3.org.',
@@ -310,10 +307,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 14 */
/* 11 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(7) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(4) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
return $.extend( true, {}, nvd3_config, {
title : 'Scatter plot',
description : 'Renders a scatter plot using NVD3 hosted at http://www.nvd3.org.',
@@ -334,10 +331,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 15 */
/* 12 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(7) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(4) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
return $.extend( true, {}, nvd3_config, {
title : 'Stacked area',
zoomable : true,
@@ -360,10 +357,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 16 */
/* 13 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(7) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(4) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
return $.extend( true, {}, nvd3_config, {
title : 'Expanded',
zoomable : true,
@@ -386,10 +383,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 17 */
/* 14 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(7) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(4) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
return $.extend(true, {}, nvd3_config, {
title : 'Stream',
description : 'Renders a stream chart using NVD3 hosted at http://www.nvd3.org.',
@@ -413,10 +410,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 18 */
/* 15 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(8) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(5) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
return $.extend( true, {}, default_config, {
title : 'Pie chart',
description : 'Renders a pie chart using NVD3 hosted at http://www.nvd3.org.',
@@ -491,10 +488,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 19 */
/* 16 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(8) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(5) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
return $.extend( true, {}, default_config, {
library : 'NVD3',
tag : 'svg',
@@ -523,10 +520,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 20 */
/* 17 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(8) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(5) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
return $.extend(true, {}, default_config, {
library : 'NVD3',
tag : 'svg',
@@ -545,10 +542,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 21 */
/* 18 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(22) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( plot_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(19) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( plot_config ) {
return $.extend( true, {}, plot_config, {
title : 'Bar diagram',
description : 'Renders a bar diagram using jqPlot hosted at http://www.jqplot.com.',
@@ -569,10 +566,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 22 */
/* 19 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(8) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(5) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
return $.extend(true, {}, default_config, {
title : '',
library : 'jqPlot',
@@ -596,10 +593,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 23 */
/* 20 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(22) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( plot_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(19) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( plot_config ) {
return $.extend( true, {}, plot_config, {
title : 'Box plot',
library : 'jqPlot',
@@ -617,10 +614,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 24 */
/* 21 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(22) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(19) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
return $.extend( true, {}, default_config, {
title : 'Discrete Histogram',
description : 'Derives a discrete histogram from tabular data using R and renders a regular bar diagram using jqPlot hosted at http://www.jqplot.com.',
@@ -636,10 +633,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 25 */
/* 22 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(22) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( plot_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(19) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( plot_config ) {
return $.extend( true, {}, plot_config, {
title : 'Line chart',
description : 'Renders a line chart using jqPlot hosted at http://www.jqplot.com.',
@@ -660,10 +657,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 26 */
/* 23 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(22) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( plot_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(19) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( plot_config ) {
return $.extend( true, {}, plot_config, {
title : 'Scatter plot',
description : 'Renders a scatter plot using jqPlot hosted at http://www.jqplot.com.',
@@ -683,7 +680,7 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 27 */
/* 24 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [], __WEBPACK_AMD_DEFINE_RESULT__ = function() {
@@ -702,7 +699,7 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 28 */
/* 25 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [], __WEBPACK_AMD_DEFINE_RESULT__ = function() {
@@ -716,7 +713,7 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 29 */
/* 26 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [], __WEBPACK_AMD_DEFINE_RESULT__ = function() {
@@ -790,6 +787,15 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
data : [ { label : 'True', value : 'true' },
{ label : 'False', value : 'false' } ]
},
show_bootstrap : {
label : 'Show bootstrap confidence values',
help : 'Select true to show bootstrap confidence values.',
type : 'select',
display : 'radio',
value : 'false',
data : [ { label : 'True', value : 'true' },
{ label : 'False', value : 'false' } ]
},
node_shape : {
label : 'Node shapes for leaves',
help : 'Select a node shape for leaves.',
@@ -807,7 +813,7 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
/***/ },
/* 30 */
/* 27 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [], __WEBPACK_AMD_DEFINE_RESULT__ = function() {
@@ -828,10 +834,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 31 */
/* 28 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(8) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(5) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
return $.extend( true, {}, default_config, {
title : 'Heatmap',
description : 'Renders a heatmap from matrix data provided in 3-column format (x, y, observation).',
@@ -894,10 +900,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 32 */
/* 29 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(31) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(28) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
return $.extend( true, {}, default_config, {
title : 'Clustered Heatmap',
description : 'Applies hierarchical clustering to a matrix using R. The data has to be provided in 3-column format. The result is displayed as clustered heatmap.',
@@ -906,7 +912,7 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 33 */
/* 30 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [], __WEBPACK_AMD_DEFINE_RESULT__ = function() {
@@ -999,7 +1005,7 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
/***/ },
/* 34 */
/* 31 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [], __WEBPACK_AMD_DEFINE_RESULT__ = function() {
@@ -1107,7 +1113,7 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 35 */
/* 32 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [], __WEBPACK_AMD_DEFINE_RESULT__ = function() {
@@ -1136,7 +1142,7 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 36 */
/* 33 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [], __WEBPACK_AMD_DEFINE_RESULT__ = function() {
config/plugins/visualizations/charts/static/repository/build/registry.js.map
+1 -1
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config/plugins/visualizations/charts/static/repository/visualizations/biojs/phylocanvas/config.js
+9
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@@ -69,6 +69,15 @@ define( [], function() {
data : [ { label : 'True', value : 'true' },
{ label : 'False', value : 'false' } ]
},
show_bootstrap : {
label : 'Show bootstrap confidence values',
help : 'Select true to show bootstrap confidence values.',
type : 'select',
display : 'radio',
value : 'false',
data : [ { label : 'True', value : 'true' },
{ label : 'False', value : 'false' } ]
},
node_shape : {
label : 'Node shapes for leaves',
help : 'Select a node shape for leaves.',
config/plugins/visualizations/charts/static/repository/visualizations/biojs/phylocanvas/wrapper.js
+8
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@@ -27,6 +27,14 @@ define( [ 'utilities/utils', 'plugins/biojs/phylocanvas/phylocanvas' ], function
tree.setNodeSize( node_size );
tree.setTextSize( text_size );
tree.lineWidth = line_width;
// Show bootstrap confidence levels
tree.showBootstrap = settings.get( 'show_bootstrap' ) === "true" ? true : false;
tree.showInternalNodeLabels = tree.showBootstrap;
// Update font and color for internal nodel labels
tree.internalLabelStyle.colour = tree.branchColour;
tree.internalLabelStyle.font = tree.font;
tree.internalLabelStyle.textSize = tree.textSize;
// Register click event on tree
tree.on( 'click', function ( e ) {
var node = tree.getNodeAtMousePosition( e );
static/scripts/bundled/analysis.bundled.js.map
+1 -1
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static/scripts/bundled/libs.bundled.js.map
+1 -1
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