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Merge pull request #22870 from mvdbeek/fix-migration-null

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[26.1] Handle existing rows in tool_source during db migration
This commit is contained in:
Marius van den Beek
2026-06-11 08:50:42 +02:00
committed by GitHub
parent cb8a02c438 b022bda415
commit 1eafd33689
1 changed files with 13 additions and 1 deletions
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lib/galaxy/model/migrations/alembic/versions_gxy/566b691307a5_persist_validated_job_internal_tool_.py
+13 -1
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@@ -6,6 +6,7 @@ Create Date: 2025-09-30 04:48:19.727414
"""
from alembic import op
from sqlalchemy import (
Column,
Integer,
@@ -55,7 +56,18 @@ def upgrade():
# Add tool_source.source_class as a new NOT NULL string column
add_column(
tool_source_table_name,
Column(tool_source_source_class_column, String(255), nullable=False),
Column(tool_source_source_class_column, String(255)),
)
# Set tool_source.source_class on existing rows
op.execute("UPDATE tool_source SET source_class = 'YamlToolSource' WHERE source_class IS NULL")
# Set nullable on tool_source.source_class
alter_column(
tool_source_table_name,
tool_source_source_class_column,
existing_type=String(255),
nullable=False,
)