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Merge branch 'release_24.0' into dev

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#	lib/galaxy/version.py
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John Davis
2024-04-02 19:07:06 -04:00
parent a21c219bf0 a7f310c163
commit 1df03738da
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packages/app/HISTORY.rst
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.. to_doc
---------
24.0.dev0
24.1.dev0
---------
-------------------
24.0.0 (2024-04-02)
-------------------
=========
Bug fixes
=========
* Reload built-in converters on toolbox reload by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#17209 <https://github.com/galaxyproject/galaxy/pull/17209>`_
* Optional Reply-to SMTP header in tool error reports by `@neoformit <https://github.com/neoformit>`_ in `#17243 <https://github.com/galaxyproject/galaxy/pull/17243>`_
* Package tests fixes by `@nsoranzo <https://github.com/nsoranzo>`_ in `#17301 <https://github.com/galaxyproject/galaxy/pull/17301>`_
* Follow-up on #17274 and #17262 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#17302 <https://github.com/galaxyproject/galaxy/pull/17302>`_
* Rollback invalidated transaction: catch them earlier by `@jdavcs <https://github.com/jdavcs>`_ in `#17312 <https://github.com/galaxyproject/galaxy/pull/17312>`_
* Fixes for flake8-bugbear 24.1.17 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#17340 <https://github.com/galaxyproject/galaxy/pull/17340>`_
* Fix data_source and data_source_async bugs by `@wm75 <https://github.com/wm75>`_ in `#17422 <https://github.com/galaxyproject/galaxy/pull/17422>`_
* More efficient change_state queries, maybe fix deadlock by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17632 <https://github.com/galaxyproject/galaxy/pull/17632>`_
* Don't index tasks without task_uuid by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17646 <https://github.com/galaxyproject/galaxy/pull/17646>`_
* Separate `ConnectedValue` from `RuntimeValue` by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17678 <https://github.com/galaxyproject/galaxy/pull/17678>`_
* Fix step type serialization for StoredWorkflowDetailed models by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17716 <https://github.com/galaxyproject/galaxy/pull/17716>`_
* Fix usage of DISTINCT by `@jdavcs <https://github.com/jdavcs>`_ in `#17759 <https://github.com/galaxyproject/galaxy/pull/17759>`_
* Also set extension and metadata on copies of job outputs when finishing job by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17777 <https://github.com/galaxyproject/galaxy/pull/17777>`_
* Use ``hg clone --stream`` to clone repos by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17786 <https://github.com/galaxyproject/galaxy/pull/17786>`_
* Defer job attributes that are usually not needed by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17795 <https://github.com/galaxyproject/galaxy/pull/17795>`_
* Fix change_datatype PJA for dynamic collections by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17803 <https://github.com/galaxyproject/galaxy/pull/17803>`_
* Fix archived histories mixing with active in histories list by `@davelopez <https://github.com/davelopez>`_ in `#17856 <https://github.com/galaxyproject/galaxy/pull/17856>`_
* Normalize extensions when loading tool by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17868 <https://github.com/galaxyproject/galaxy/pull/17868>`_
* Ignore user data table errors for now by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17880 <https://github.com/galaxyproject/galaxy/pull/17880>`_
============
Enhancements
============
* Add harmonize collections tool (or whatever other name) by `@lldelisle <https://github.com/lldelisle>`_ in `#16662 <https://github.com/galaxyproject/galaxy/pull/16662>`_
* Add support for Python 3.12 by `@tuncK <https://github.com/tuncK>`_ in `#16796 <https://github.com/galaxyproject/galaxy/pull/16796>`_
* SQLAlchemy 2.0 upgrades (part 5) by `@jdavcs <https://github.com/jdavcs>`_ in `#16932 <https://github.com/galaxyproject/galaxy/pull/16932>`_
* Python 3.8 as minimum by `@mr-c <https://github.com/mr-c>`_ in `#16954 <https://github.com/galaxyproject/galaxy/pull/16954>`_
* Support for OIDC API Auth and OIDC integration tests by `@nuwang <https://github.com/nuwang>`_ in `#16977 <https://github.com/galaxyproject/galaxy/pull/16977>`_
* Toward declarative help for Galaxy markdown directives. by `@jmchilton <https://github.com/jmchilton>`_ in `#16979 <https://github.com/galaxyproject/galaxy/pull/16979>`_
* Extend regex groups in stdio regex matches by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#17016 <https://github.com/galaxyproject/galaxy/pull/17016>`_
* Vueify Admin User Grid by `@guerler <https://github.com/guerler>`_ in `#17030 <https://github.com/galaxyproject/galaxy/pull/17030>`_
* Remove web framework dependency from tools by `@davelopez <https://github.com/davelopez>`_ in `#17058 <https://github.com/galaxyproject/galaxy/pull/17058>`_
* Add select parameter with options from remote resources by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17087 <https://github.com/galaxyproject/galaxy/pull/17087>`_
* Expose more tool information / navigability in UI. by `@jmchilton <https://github.com/jmchilton>`_ in `#17105 <https://github.com/galaxyproject/galaxy/pull/17105>`_
* Vueify Admin Roles Grid by `@guerler <https://github.com/guerler>`_ in `#17118 <https://github.com/galaxyproject/galaxy/pull/17118>`_
* SA2.0 updates: handling "object is being merged into a Session along the backref cascade path" by `@jdavcs <https://github.com/jdavcs>`_ in `#17122 <https://github.com/galaxyproject/galaxy/pull/17122>`_
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#17123 <https://github.com/galaxyproject/galaxy/pull/17123>`_
* Vueify Admin Groups Grid by `@guerler <https://github.com/guerler>`_ in `#17126 <https://github.com/galaxyproject/galaxy/pull/17126>`_
* Towards SQLAlchemy 2.0: fix last cases of RemovedIn20Warning by `@jdavcs <https://github.com/jdavcs>`_ in `#17132 <https://github.com/galaxyproject/galaxy/pull/17132>`_
* Vueify Admin Forms and Quota grids by `@guerler <https://github.com/guerler>`_ in `#17141 <https://github.com/galaxyproject/galaxy/pull/17141>`_
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#17157 <https://github.com/galaxyproject/galaxy/pull/17157>`_
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#17201 <https://github.com/galaxyproject/galaxy/pull/17201>`_
* Vendorize fastapi-utls.cbv by `@jdavcs <https://github.com/jdavcs>`_ in `#17205 <https://github.com/galaxyproject/galaxy/pull/17205>`_
* Fix usage of graphene-sqlalchemy, bump to 3.0.0rc1 by `@jdavcs <https://github.com/jdavcs>`_ in `#17216 <https://github.com/galaxyproject/galaxy/pull/17216>`_
* Vueifiy History Grids by `@guerler <https://github.com/guerler>`_ in `#17219 <https://github.com/galaxyproject/galaxy/pull/17219>`_
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#17230 <https://github.com/galaxyproject/galaxy/pull/17230>`_
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#17235 <https://github.com/galaxyproject/galaxy/pull/17235>`_
* Allow job files to consume TUS uploads by `@jmchilton <https://github.com/jmchilton>`_ in `#17242 <https://github.com/galaxyproject/galaxy/pull/17242>`_
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#17247 <https://github.com/galaxyproject/galaxy/pull/17247>`_
* Migrate models to pydantic 2 by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17262 <https://github.com/galaxyproject/galaxy/pull/17262>`_
* Consider Null inputs by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#17271 <https://github.com/galaxyproject/galaxy/pull/17271>`_
* Add OIDC backend configuration schema and validation by `@uwwint <https://github.com/uwwint>`_ in `#17274 <https://github.com/galaxyproject/galaxy/pull/17274>`_
* Adds delete, purge and undelete batch operations to History Grid by `@guerler <https://github.com/guerler>`_ in `#17282 <https://github.com/galaxyproject/galaxy/pull/17282>`_
* Add ``__KEEP_SUCCESS_DATASETS__`` by `@lldelisle <https://github.com/lldelisle>`_ in `#17294 <https://github.com/galaxyproject/galaxy/pull/17294>`_
* Improve ModelManager type hints by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17299 <https://github.com/galaxyproject/galaxy/pull/17299>`_
* API endpoint that allows "changing" the objectstore for "safe" scenarios. by `@jmchilton <https://github.com/jmchilton>`_ in `#17329 <https://github.com/galaxyproject/galaxy/pull/17329>`_
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#17333 <https://github.com/galaxyproject/galaxy/pull/17333>`_
* Add element_identifier and ext to inputs config file export by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#17357 <https://github.com/galaxyproject/galaxy/pull/17357>`_
* Remove unused statements in job search function by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17361 <https://github.com/galaxyproject/galaxy/pull/17361>`_
* Enable ``warn_unreachable`` mypy option by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17365 <https://github.com/galaxyproject/galaxy/pull/17365>`_
* Fix type annotation of code using XML etree by `@nsoranzo <https://github.com/nsoranzo>`_ in `#17367 <https://github.com/galaxyproject/galaxy/pull/17367>`_
* More specific type annotation for ``BaseJobExec.parse_status()`` by `@nsoranzo <https://github.com/nsoranzo>`_ in `#17381 <https://github.com/galaxyproject/galaxy/pull/17381>`_
* Cancel all active jobs when the user is deleted by `@davelopez <https://github.com/davelopez>`_ in `#17390 <https://github.com/galaxyproject/galaxy/pull/17390>`_
* Update to black 2024 stable style by `@nsoranzo <https://github.com/nsoranzo>`_ in `#17391 <https://github.com/galaxyproject/galaxy/pull/17391>`_
* Purge `groups` and `roles` from DB (for real) by `@davelopez <https://github.com/davelopez>`_ in `#17411 <https://github.com/galaxyproject/galaxy/pull/17411>`_
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#17420 <https://github.com/galaxyproject/galaxy/pull/17420>`_
* Allow using tool data bundles as inputs to reference data select parameters by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17435 <https://github.com/galaxyproject/galaxy/pull/17435>`_
* Adds published histories to grid list by `@guerler <https://github.com/guerler>`_ in `#17449 <https://github.com/galaxyproject/galaxy/pull/17449>`_
* Allow filtering history datasets by object store ID and quota source. by `@jmchilton <https://github.com/jmchilton>`_ in `#17460 <https://github.com/galaxyproject/galaxy/pull/17460>`_
* `data_column` parameter: use `column_names` metadata if present by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#17478 <https://github.com/galaxyproject/galaxy/pull/17478>`_
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#17486 <https://github.com/galaxyproject/galaxy/pull/17486>`_
* Consolidate resource grids into tab views by `@guerler <https://github.com/guerler>`_ in `#17487 <https://github.com/galaxyproject/galaxy/pull/17487>`_
* Update k8s docker python to 3.12 by `@nuwang <https://github.com/nuwang>`_ in `#17494 <https://github.com/galaxyproject/galaxy/pull/17494>`_
* add encode ID API endpoint by `@mira-miracoli <https://github.com/mira-miracoli>`_ in `#17510 <https://github.com/galaxyproject/galaxy/pull/17510>`_
* Fixing data_source tools and incrementing tool profile by `@wm75 <https://github.com/wm75>`_ in `#17515 <https://github.com/galaxyproject/galaxy/pull/17515>`_
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#17541 <https://github.com/galaxyproject/galaxy/pull/17541>`_
* Add `image_diff` comparison method for test output verification using images by `@kostrykin <https://github.com/kostrykin>`_ in `#17556 <https://github.com/galaxyproject/galaxy/pull/17556>`_
* Filter out subworkflow invocations by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17558 <https://github.com/galaxyproject/galaxy/pull/17558>`_
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#17580 <https://github.com/galaxyproject/galaxy/pull/17580>`_
* Restore histories API behavior for `keys` query parameter by `@davelopez <https://github.com/davelopez>`_ in `#17779 <https://github.com/galaxyproject/galaxy/pull/17779>`_
* Fix datasets API custom keys encoding by `@davelopez <https://github.com/davelopez>`_ in `#17793 <https://github.com/galaxyproject/galaxy/pull/17793>`_
* Improved error messages for runtime sharing problems. by `@jmchilton <https://github.com/jmchilton>`_ in `#17794 <https://github.com/galaxyproject/galaxy/pull/17794>`_
* Allow admin to sharpen language about selected object stores. by `@jmchilton <https://github.com/jmchilton>`_ in `#17806 <https://github.com/galaxyproject/galaxy/pull/17806>`_
=============
Other changes
=============
* consistently compare profile versions by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#16492 <https://github.com/galaxyproject/galaxy/pull/16492>`_
-------------------
23.2.1 (2024-02-21)
-------------------
@@ -87,7 +187,7 @@ Enhancements
* Galaxy Markdown - add workflow image and license to Galaxy markdown. by `@jmchilton <https://github.com/jmchilton>`_ in `#16672 <https://github.com/galaxyproject/galaxy/pull/16672>`_
* Implement instance URLs in Galaxy markdown. by `@jmchilton <https://github.com/jmchilton>`_ in `#16675 <https://github.com/galaxyproject/galaxy/pull/16675>`_
* Change Sentry error reporting plug-in by `@kysrpex <https://github.com/kysrpex>`_ in `#16686 <https://github.com/galaxyproject/galaxy/pull/16686>`_
* Use fs.onedatarestfs for Onedata files source plugin implementation by `@lopiola <https://github.com/lopiola>`_ in `#16690 <https://github.com/galaxyproject/galaxy/pull/16690>`_
* Use fs.onedatarestfs for Onedata files source plugin implementation by `@lopiola <https://github.com/lopiola>`_ in `#16690 <https://github.com/galaxyproject/galaxy/pull/16690>`_
* Enhance task monitor composable by `@davelopez <https://github.com/davelopez>`_ in `#16695 <https://github.com/galaxyproject/galaxy/pull/16695>`_
* Misc. edits/refactorings to session handling by `@jdavcs <https://github.com/jdavcs>`_ in `#16712 <https://github.com/galaxyproject/galaxy/pull/16712>`_
* SQLAlchemy 2.0 upgrades (part 2) by `@jdavcs <https://github.com/jdavcs>`_ in `#16724 <https://github.com/galaxyproject/galaxy/pull/16724>`_
packages/auth/HISTORY.rst
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.. to_doc
---------
24.0.dev0
24.1.dev0
---------
-------------------
24.0.0 (2024-04-02)
-------------------
=========
Bug fixes
=========
* LDAP3 fix for attributes returned as strings by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#17305 <https://github.com/galaxyproject/galaxy/pull/17305>`_
============
Enhancements
============
* Python 3.8 as minimum by `@mr-c <https://github.com/mr-c>`_ in `#16954 <https://github.com/galaxyproject/galaxy/pull/16954>`_
* Update to black 2024 stable style by `@nsoranzo <https://github.com/nsoranzo>`_ in `#17391 <https://github.com/galaxyproject/galaxy/pull/17391>`_
-------------------
23.2.1 (2024-02-21)
-------------------
packages/config/HISTORY.rst
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.. to_doc
---------
24.0.dev0
24.1.dev0
---------
-------------------
24.0.0 (2024-04-02)
-------------------
=========
Bug fixes
=========
* Follow-up on #17274 and #17262 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#17302 <https://github.com/galaxyproject/galaxy/pull/17302>`_
* Fix minor oidc_backends_config comment bug by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#17385 <https://github.com/galaxyproject/galaxy/pull/17385>`_
============
Enhancements
============
* Add harmonize collections tool (or whatever other name) by `@lldelisle <https://github.com/lldelisle>`_ in `#16662 <https://github.com/galaxyproject/galaxy/pull/16662>`_
* Python 3.8 as minimum by `@mr-c <https://github.com/mr-c>`_ in `#16954 <https://github.com/galaxyproject/galaxy/pull/16954>`_
* Support for OIDC API Auth and OIDC integration tests by `@nuwang <https://github.com/nuwang>`_ in `#16977 <https://github.com/galaxyproject/galaxy/pull/16977>`_
* Add support for (fast5.tar).xz binary compressed files by `@tuncK <https://github.com/tuncK>`_ in `#17106 <https://github.com/galaxyproject/galaxy/pull/17106>`_
* Add a3m datatype by `@astrovsky01 <https://github.com/astrovsky01>`_ in `#17217 <https://github.com/galaxyproject/galaxy/pull/17217>`_
* Convert sample object store configuration to YAML and support configuring inline by `@natefoo <https://github.com/natefoo>`_ in `#17222 <https://github.com/galaxyproject/galaxy/pull/17222>`_
* Allow job files to consume TUS uploads by `@jmchilton <https://github.com/jmchilton>`_ in `#17242 <https://github.com/galaxyproject/galaxy/pull/17242>`_
* Add OIDC backend configuration schema and validation by `@uwwint <https://github.com/uwwint>`_ in `#17274 <https://github.com/galaxyproject/galaxy/pull/17274>`_
* Update to black 2024 stable style by `@nsoranzo <https://github.com/nsoranzo>`_ in `#17391 <https://github.com/galaxyproject/galaxy/pull/17391>`_
* Allow using tool data bundles as inputs to reference data select parameters by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17435 <https://github.com/galaxyproject/galaxy/pull/17435>`_
* Use short link for TPV shared database by `@nuwang <https://github.com/nuwang>`_ in `#17467 <https://github.com/galaxyproject/galaxy/pull/17467>`_
* Feature SBOL datatypes by `@guillaume-gricourt <https://github.com/guillaume-gricourt>`_ in `#17482 <https://github.com/galaxyproject/galaxy/pull/17482>`_
* Add documentation on how to use vault keys in file sources by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#17498 <https://github.com/galaxyproject/galaxy/pull/17498>`_
* add npy datatype by `@astrovsky01 <https://github.com/astrovsky01>`_ in `#17517 <https://github.com/galaxyproject/galaxy/pull/17517>`_
* Enhance Avivator display app to support regular Tiffs by `@davelopez <https://github.com/davelopez>`_ in `#17554 <https://github.com/galaxyproject/galaxy/pull/17554>`_
* Allow admin to sharpen language about selected object stores. by `@jmchilton <https://github.com/jmchilton>`_ in `#17806 <https://github.com/galaxyproject/galaxy/pull/17806>`_
-------------------
23.2.1 (2024-02-21)
-------------------
@@ -40,7 +73,7 @@ Enhancements
* Support new genome browser chain file format by `@claudiofr <https://github.com/claudiofr>`_ in `#16576 <https://github.com/galaxyproject/galaxy/pull/16576>`_
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#16577 <https://github.com/galaxyproject/galaxy/pull/16577>`_
* Implement instance URLs in Galaxy markdown. by `@jmchilton <https://github.com/jmchilton>`_ in `#16675 <https://github.com/galaxyproject/galaxy/pull/16675>`_
* Use fs.onedatarestfs for Onedata files source plugin implementation by `@lopiola <https://github.com/lopiola>`_ in `#16690 <https://github.com/galaxyproject/galaxy/pull/16690>`_
* Use fs.onedatarestfs for Onedata files source plugin implementation by `@lopiola <https://github.com/lopiola>`_ in `#16690 <https://github.com/galaxyproject/galaxy/pull/16690>`_
* Update datatypes_conf.xml.sample with docx type by `@yvanlebras <https://github.com/yvanlebras>`_ in `#16713 <https://github.com/galaxyproject/galaxy/pull/16713>`_
* Replace ELIXIR AAI button with Life Science login by `@sebastian-schaaf <https://github.com/sebastian-schaaf>`_ in `#16762 <https://github.com/galaxyproject/galaxy/pull/16762>`_
* Add EGI Check-in as OIDC authentication option by `@enolfc <https://github.com/enolfc>`_ in `#16782 <https://github.com/galaxyproject/galaxy/pull/16782>`_
packages/data/HISTORY.rst
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.. to_doc
---------
24.0.dev0
24.1.dev0
---------
-------------------
24.0.0 (2024-04-02)
-------------------
=========
Bug fixes
=========
* Fix for converter tests by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#17188 <https://github.com/galaxyproject/galaxy/pull/17188>`_
* correct dbkey for minerva display app by `@hexylena <https://github.com/hexylena>`_ in `#17196 <https://github.com/galaxyproject/galaxy/pull/17196>`_
* Fix invocation serialization if no state was set by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17278 <https://github.com/galaxyproject/galaxy/pull/17278>`_
* Fix quotas ID encoding by `@davelopez <https://github.com/davelopez>`_ in `#17335 <https://github.com/galaxyproject/galaxy/pull/17335>`_
* Fix model store exports that include implicit conversions. by `@jmchilton <https://github.com/jmchilton>`_ in `#17346 <https://github.com/galaxyproject/galaxy/pull/17346>`_
* Fix bug: create new PSAAssociation if not in database by `@jdavcs <https://github.com/jdavcs>`_ in `#17516 <https://github.com/galaxyproject/galaxy/pull/17516>`_
* Fix social_core methods by `@jdavcs <https://github.com/jdavcs>`_ in `#17530 <https://github.com/galaxyproject/galaxy/pull/17530>`_
* Fix ancient bug: incorrect usage of func.coalesce in User model by `@jdavcs <https://github.com/jdavcs>`_ in `#17577 <https://github.com/galaxyproject/galaxy/pull/17577>`_
* Account for newlines in CIF Datatype sniffer by `@patrick-austin <https://github.com/patrick-austin>`_ in `#17582 <https://github.com/galaxyproject/galaxy/pull/17582>`_
* Anticipate PendingRollbackError in ``check_database_connection`` by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17598 <https://github.com/galaxyproject/galaxy/pull/17598>`_
* Add basic model import attribute validation by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17628 <https://github.com/galaxyproject/galaxy/pull/17628>`_
* More efficient change_state queries, maybe fix deadlock by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17632 <https://github.com/galaxyproject/galaxy/pull/17632>`_
* Npz sniffing: do not read the whole file by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#17672 <https://github.com/galaxyproject/galaxy/pull/17672>`_
* Assert that at least one file in npz zipfile ends with .npy by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17679 <https://github.com/galaxyproject/galaxy/pull/17679>`_
* Workflow Comment Indexing by `@ElectronicBlueberry <https://github.com/ElectronicBlueberry>`_ in `#17700 <https://github.com/galaxyproject/galaxy/pull/17700>`_
* Fix source history update_time being updated when importing a public history by `@jmchilton <https://github.com/jmchilton>`_ in `#17728 <https://github.com/galaxyproject/galaxy/pull/17728>`_
* Also set extension and metadata on copies of job outputs when finishing job by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17777 <https://github.com/galaxyproject/galaxy/pull/17777>`_
* Defer job attributes that are usually not needed by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17795 <https://github.com/galaxyproject/galaxy/pull/17795>`_
* Fix change_datatype PJA for dynamic collections by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17803 <https://github.com/galaxyproject/galaxy/pull/17803>`_
* Simplify nested collection joins by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17817 <https://github.com/galaxyproject/galaxy/pull/17817>`_
* Fix very slow user data table query by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17830 <https://github.com/galaxyproject/galaxy/pull/17830>`_
* Update db revision 24.0 release tags by `@jdavcs <https://github.com/jdavcs>`_ in `#17834 <https://github.com/galaxyproject/galaxy/pull/17834>`_
* Minor refactor of query building logic for readability by `@jdavcs <https://github.com/jdavcs>`_ in `#17835 <https://github.com/galaxyproject/galaxy/pull/17835>`_
* Fix user login when duplicate UserRoleAssociation exists by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17854 <https://github.com/galaxyproject/galaxy/pull/17854>`_
============
Enhancements
============
* Make columns types an empty list for empty tabular data by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#13918 <https://github.com/galaxyproject/galaxy/pull/13918>`_
* port invocation API to fastapi by `@martenson <https://github.com/martenson>`_ in `#16707 <https://github.com/galaxyproject/galaxy/pull/16707>`_
* SQLAlchemy 2.0 upgrades (part 5) by `@jdavcs <https://github.com/jdavcs>`_ in `#16932 <https://github.com/galaxyproject/galaxy/pull/16932>`_
* Python 3.8 as minimum by `@mr-c <https://github.com/mr-c>`_ in `#16954 <https://github.com/galaxyproject/galaxy/pull/16954>`_
* Expose more tool information / navigability in UI. by `@jmchilton <https://github.com/jmchilton>`_ in `#17105 <https://github.com/galaxyproject/galaxy/pull/17105>`_
* Add support for (fast5.tar).xz binary compressed files by `@tuncK <https://github.com/tuncK>`_ in `#17106 <https://github.com/galaxyproject/galaxy/pull/17106>`_
* SA2.0 updates: handling "object is being merged into a Session along the backref cascade path" by `@jdavcs <https://github.com/jdavcs>`_ in `#17122 <https://github.com/galaxyproject/galaxy/pull/17122>`_
* Towards SQLAlchemy 2.0: fix last cases of RemovedIn20Warning by `@jdavcs <https://github.com/jdavcs>`_ in `#17132 <https://github.com/galaxyproject/galaxy/pull/17132>`_
* Create pydantic model for the return of show operation - get: `/api/jobs/{job_id}` by `@heisner-tillman <https://github.com/heisner-tillman>`_ in `#17153 <https://github.com/galaxyproject/galaxy/pull/17153>`_
* Much simpler default dataset permissions for typical users. by `@jmchilton <https://github.com/jmchilton>`_ in `#17166 <https://github.com/galaxyproject/galaxy/pull/17166>`_
* Add future=True flag to SA engine by `@jdavcs <https://github.com/jdavcs>`_ in `#17174 <https://github.com/galaxyproject/galaxy/pull/17174>`_
* Add future=True flag to SA session by `@jdavcs <https://github.com/jdavcs>`_ in `#17179 <https://github.com/galaxyproject/galaxy/pull/17179>`_
* Vueifiy History Grids by `@guerler <https://github.com/guerler>`_ in `#17219 <https://github.com/galaxyproject/galaxy/pull/17219>`_
* Convert sample object store configuration to YAML and support configuring inline by `@natefoo <https://github.com/natefoo>`_ in `#17222 <https://github.com/galaxyproject/galaxy/pull/17222>`_
* Migrate models to pydantic 2 by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17262 <https://github.com/galaxyproject/galaxy/pull/17262>`_
* API endpoint that allows "changing" the objectstore for "safe" scenarios. by `@jmchilton <https://github.com/jmchilton>`_ in `#17329 <https://github.com/galaxyproject/galaxy/pull/17329>`_
* Enable ``warn_unreachable`` mypy option by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17365 <https://github.com/galaxyproject/galaxy/pull/17365>`_
* Fix type annotation of code using XML etree by `@nsoranzo <https://github.com/nsoranzo>`_ in `#17367 <https://github.com/galaxyproject/galaxy/pull/17367>`_
* Add explicit cache_ok attribute to JSONType subclass by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17376 <https://github.com/galaxyproject/galaxy/pull/17376>`_
* More specific type annotation for ``BaseJobExec.parse_status()`` by `@nsoranzo <https://github.com/nsoranzo>`_ in `#17381 <https://github.com/galaxyproject/galaxy/pull/17381>`_
* Update to black 2024 stable style by `@nsoranzo <https://github.com/nsoranzo>`_ in `#17391 <https://github.com/galaxyproject/galaxy/pull/17391>`_
* Allow using tool data bundles as inputs to reference data select parameters by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17435 <https://github.com/galaxyproject/galaxy/pull/17435>`_
* UI for "relocating" a dataset to a new object store (when safe) by `@jmchilton <https://github.com/jmchilton>`_ in `#17437 <https://github.com/galaxyproject/galaxy/pull/17437>`_
* Allow filtering history datasets by object store ID and quota source. by `@jmchilton <https://github.com/jmchilton>`_ in `#17460 <https://github.com/galaxyproject/galaxy/pull/17460>`_
* Faster FASTA and FASTQ metadata setting by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#17462 <https://github.com/galaxyproject/galaxy/pull/17462>`_
* Feature SBOL datatypes by `@guillaume-gricourt <https://github.com/guillaume-gricourt>`_ in `#17482 <https://github.com/galaxyproject/galaxy/pull/17482>`_
* Display workflow invocation counts. by `@jmchilton <https://github.com/jmchilton>`_ in `#17488 <https://github.com/galaxyproject/galaxy/pull/17488>`_
* add npy datatype by `@astrovsky01 <https://github.com/astrovsky01>`_ in `#17517 <https://github.com/galaxyproject/galaxy/pull/17517>`_
* Enhance Avivator display app to support regular Tiffs by `@davelopez <https://github.com/davelopez>`_ in `#17554 <https://github.com/galaxyproject/galaxy/pull/17554>`_
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#17580 <https://github.com/galaxyproject/galaxy/pull/17580>`_
* Add migrations revision identifier for 24.0 by `@jdavcs <https://github.com/jdavcs>`_ in `#17589 <https://github.com/galaxyproject/galaxy/pull/17589>`_
-------------------
23.2.1 (2024-02-21)
-------------------
packages/files/HISTORY.rst
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.. to_doc
---------
24.0.dev0
24.1.dev0
---------
-------------------
24.0.0 (2024-04-02)
-------------------
============
Enhancements
============
* Add support for Python 3.12 by `@tuncK <https://github.com/tuncK>`_ in `#16796 <https://github.com/galaxyproject/galaxy/pull/16796>`_
* Python 3.8 as minimum by `@mr-c <https://github.com/mr-c>`_ in `#16954 <https://github.com/galaxyproject/galaxy/pull/16954>`_
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#17235 <https://github.com/galaxyproject/galaxy/pull/17235>`_
* fix s3fs templating by `@bgruening <https://github.com/bgruening>`_ in `#17311 <https://github.com/galaxyproject/galaxy/pull/17311>`_
* Update to black 2024 stable style by `@nsoranzo <https://github.com/nsoranzo>`_ in `#17391 <https://github.com/galaxyproject/galaxy/pull/17391>`_
-------------------
23.2.1 (2024-02-21)
-------------------
@@ -29,7 +44,7 @@ Enhancements
* Add Invenio RDM repository integration by `@davelopez <https://github.com/davelopez>`_ in `#16381 <https://github.com/galaxyproject/galaxy/pull/16381>`_
* Refactor FilesDialog + Remote Files API schema improvements by `@davelopez <https://github.com/davelopez>`_ in `#16420 <https://github.com/galaxyproject/galaxy/pull/16420>`_
* Use fs.onedatarestfs for Onedata files source plugin implementation by `@lopiola <https://github.com/lopiola>`_ in `#16690 <https://github.com/galaxyproject/galaxy/pull/16690>`_
* Use fs.onedatarestfs for Onedata files source plugin implementation by `@lopiola <https://github.com/lopiola>`_ in `#16690 <https://github.com/galaxyproject/galaxy/pull/16690>`_
* Remove record access handling for Invenio RDM plugin by `@davelopez <https://github.com/davelopez>`_ in `#16900 <https://github.com/galaxyproject/galaxy/pull/16900>`_
* Enhance Invenio RDM integration by `@davelopez <https://github.com/davelopez>`_ in `#16964 <https://github.com/galaxyproject/galaxy/pull/16964>`_
packages/job_execution/HISTORY.rst
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.. to_doc
---------
24.0.dev0
24.1.dev0
---------
-------------------
24.0.0 (2024-04-02)
-------------------
=========
Bug fixes
=========
* Fixes for output discovery by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#17266 <https://github.com/galaxyproject/galaxy/pull/17266>`_
* Fix change_datatype PJA for dynamic collections by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17803 <https://github.com/galaxyproject/galaxy/pull/17803>`_
============
Enhancements
============
* Python 3.8 as minimum by `@mr-c <https://github.com/mr-c>`_ in `#16954 <https://github.com/galaxyproject/galaxy/pull/16954>`_
* Extend regex groups in stdio regex matches by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#17016 <https://github.com/galaxyproject/galaxy/pull/17016>`_
* Update to black 2024 stable style by `@nsoranzo <https://github.com/nsoranzo>`_ in `#17391 <https://github.com/galaxyproject/galaxy/pull/17391>`_
-------------------
23.2.1 (2024-02-21)
-------------------
packages/job_metrics/HISTORY.rst
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.. to_doc
---------
24.0.dev0
24.1.dev0
---------
-------------------
24.0.0 (2024-04-02)
-------------------
=========
Bug fixes
=========
* Stringify cgroups metrics formatted value return by `@dannon <https://github.com/dannon>`_ in `#17520 <https://github.com/galaxyproject/galaxy/pull/17520>`_
============
Enhancements
============
* Update to black 2024 stable style by `@nsoranzo <https://github.com/nsoranzo>`_ in `#17391 <https://github.com/galaxyproject/galaxy/pull/17391>`_
-------------------
23.2.1 (2024-02-21)
-------------------
packages/navigation/HISTORY.rst
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.. to_doc
---------
24.0.dev0
24.1.dev0
---------
-------------------
24.0.0 (2024-04-02)
-------------------
============
Enhancements
============
* Python 3.8 as minimum by `@mr-c <https://github.com/mr-c>`_ in `#16954 <https://github.com/galaxyproject/galaxy/pull/16954>`_
-------------------
23.2.1 (2024-02-21)
-------------------
packages/objectstore/HISTORY.rst
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.. to_doc
---------
24.0.dev0
24.1.dev0
---------
-------------------
24.0.0 (2024-04-02)
-------------------
============
Enhancements
============
* Convert sample object store configuration to YAML and support configuring inline by `@natefoo <https://github.com/natefoo>`_ in `#17222 <https://github.com/galaxyproject/galaxy/pull/17222>`_
* Migrate models to pydantic 2 by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17262 <https://github.com/galaxyproject/galaxy/pull/17262>`_
* API endpoint that allows "changing" the objectstore for "safe" scenarios. by `@jmchilton <https://github.com/jmchilton>`_ in `#17329 <https://github.com/galaxyproject/galaxy/pull/17329>`_
* Update to black 2024 stable style by `@nsoranzo <https://github.com/nsoranzo>`_ in `#17391 <https://github.com/galaxyproject/galaxy/pull/17391>`_
* Allow filtering history datasets by object store ID and quota source. by `@jmchilton <https://github.com/jmchilton>`_ in `#17460 <https://github.com/galaxyproject/galaxy/pull/17460>`_
* Improved error messages for runtime sharing problems. by `@jmchilton <https://github.com/jmchilton>`_ in `#17794 <https://github.com/galaxyproject/galaxy/pull/17794>`_
-------------------
23.2.1 (2024-02-21)
-------------------
packages/schema/HISTORY.rst
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.. to_doc
---------
24.0.dev0
24.1.dev0
---------
-------------------
24.0.0 (2024-04-02)
-------------------
=========
Bug fixes
=========
* Fix Workflow Comment Model for Pydantic 2 by `@ElectronicBlueberry <https://github.com/ElectronicBlueberry>`_ in `#17296 <https://github.com/galaxyproject/galaxy/pull/17296>`_
* Add basic model import attribute validation by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17628 <https://github.com/galaxyproject/galaxy/pull/17628>`_
* Make latest_workflow_uuid optional by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17629 <https://github.com/galaxyproject/galaxy/pull/17629>`_
* Fix workflow person validation by `@dannon <https://github.com/dannon>`_ in `#17636 <https://github.com/galaxyproject/galaxy/pull/17636>`_
* Make WorkflowInput label, value and uuid optional by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17638 <https://github.com/galaxyproject/galaxy/pull/17638>`_
* Fix step type serialization for StoredWorkflowDetailed models by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17716 <https://github.com/galaxyproject/galaxy/pull/17716>`_
* Fix input parameter step type by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17767 <https://github.com/galaxyproject/galaxy/pull/17767>`_
* Fix optional types in Help Forum API by `@davelopez <https://github.com/davelopez>`_ in `#17832 <https://github.com/galaxyproject/galaxy/pull/17832>`_
* Fix archived histories mixing with active in histories list by `@davelopez <https://github.com/davelopez>`_ in `#17856 <https://github.com/galaxyproject/galaxy/pull/17856>`_
============
Enhancements
============
* port invocation API to fastapi by `@martenson <https://github.com/martenson>`_ in `#16707 <https://github.com/galaxyproject/galaxy/pull/16707>`_
* Python 3.8 as minimum by `@mr-c <https://github.com/mr-c>`_ in `#16954 <https://github.com/galaxyproject/galaxy/pull/16954>`_
* Toward declarative help for Galaxy markdown directives. by `@jmchilton <https://github.com/jmchilton>`_ in `#16979 <https://github.com/galaxyproject/galaxy/pull/16979>`_
* Create pydantic model for the return of show operation - get: `/api/jobs/{job_id}` by `@heisner-tillman <https://github.com/heisner-tillman>`_ in `#17153 <https://github.com/galaxyproject/galaxy/pull/17153>`_
* Vueifiy History Grids by `@guerler <https://github.com/guerler>`_ in `#17219 <https://github.com/galaxyproject/galaxy/pull/17219>`_
* Refactor two of the missing invocation routes to FastAPI by `@heisner-tillman <https://github.com/heisner-tillman>`_ in `#17237 <https://github.com/galaxyproject/galaxy/pull/17237>`_
* Migrate models to pydantic 2 by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17262 <https://github.com/galaxyproject/galaxy/pull/17262>`_
* Combines legacy qv-pattern and advanced filter pattern in history index endpoint by `@guerler <https://github.com/guerler>`_ in `#17368 <https://github.com/galaxyproject/galaxy/pull/17368>`_
* Update to black 2024 stable style by `@nsoranzo <https://github.com/nsoranzo>`_ in `#17391 <https://github.com/galaxyproject/galaxy/pull/17391>`_
* Allow using tool data bundles as inputs to reference data select parameters by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17435 <https://github.com/galaxyproject/galaxy/pull/17435>`_
* Refactor Workflow API routes - Part 1 by `@heisner-tillman <https://github.com/heisner-tillman>`_ in `#17463 <https://github.com/galaxyproject/galaxy/pull/17463>`_
* Consolidate resource grids into tab views by `@guerler <https://github.com/guerler>`_ in `#17487 <https://github.com/galaxyproject/galaxy/pull/17487>`_
* Display workflow invocation counts. by `@jmchilton <https://github.com/jmchilton>`_ in `#17488 <https://github.com/galaxyproject/galaxy/pull/17488>`_
* Filter out subworkflow invocations by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17558 <https://github.com/galaxyproject/galaxy/pull/17558>`_
* Restore histories API behavior for `keys` query parameter by `@davelopez <https://github.com/davelopez>`_ in `#17779 <https://github.com/galaxyproject/galaxy/pull/17779>`_
* Fix datasets API custom keys encoding by `@davelopez <https://github.com/davelopez>`_ in `#17793 <https://github.com/galaxyproject/galaxy/pull/17793>`_
-------------------
23.2.1 (2024-02-21)
-------------------
packages/selenium/HISTORY.rst
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.. to_doc
---------
24.0.dev0
24.1.dev0
---------
-------------------
24.0.0 (2024-04-02)
-------------------
=========
Bug fixes
=========
* Update tour testing selector usage. by `@jmchilton <https://github.com/jmchilton>`_ in `#14005 <https://github.com/galaxyproject/galaxy/pull/14005>`_
* Fix history filters taking up space in `GridList` by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#17652 <https://github.com/galaxyproject/galaxy/pull/17652>`_
============
Enhancements
============
* New Workflow List and Card View by `@itisAliRH <https://github.com/itisAliRH>`_ in `#16607 <https://github.com/galaxyproject/galaxy/pull/16607>`_
* Python 3.8 as minimum by `@mr-c <https://github.com/mr-c>`_ in `#16954 <https://github.com/galaxyproject/galaxy/pull/16954>`_
* Vueifiy History Grids by `@guerler <https://github.com/guerler>`_ in `#17219 <https://github.com/galaxyproject/galaxy/pull/17219>`_
* Adds delete, purge and undelete batch operations to History Grid by `@guerler <https://github.com/guerler>`_ in `#17282 <https://github.com/galaxyproject/galaxy/pull/17282>`_
* Custom Multiselect by `@ElectronicBlueberry <https://github.com/ElectronicBlueberry>`_ in `#17331 <https://github.com/galaxyproject/galaxy/pull/17331>`_
* Enable ``warn_unreachable`` mypy option by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17365 <https://github.com/galaxyproject/galaxy/pull/17365>`_
* Update to black 2024 stable style by `@nsoranzo <https://github.com/nsoranzo>`_ in `#17391 <https://github.com/galaxyproject/galaxy/pull/17391>`_
* Adds published histories to grid list by `@guerler <https://github.com/guerler>`_ in `#17449 <https://github.com/galaxyproject/galaxy/pull/17449>`_
* Consolidate resource grids into tab views by `@guerler <https://github.com/guerler>`_ in `#17487 <https://github.com/galaxyproject/galaxy/pull/17487>`_
-------------------
23.2.1 (2024-02-21)
-------------------
packages/test_api/HISTORY.rst
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.. to_doc
---------
24.0.dev0
24.1.dev0
---------
-------------------
24.0.0 (2024-04-02)
-------------------
=========
Bug fixes
=========
* Only check access permissions in ``/api/{history_dataset_collection_id}/contents/{dataset_collection_id}`` by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#17444 <https://github.com/galaxyproject/galaxy/pull/17444>`_
* Fix ``test_index_advanced_filter`` API test re-running by `@nsoranzo <https://github.com/nsoranzo>`_ in `#17547 <https://github.com/galaxyproject/galaxy/pull/17547>`_
* Limit new anon histories by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17657 <https://github.com/galaxyproject/galaxy/pull/17657>`_
* Fix step type serialization for StoredWorkflowDetailed models by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17716 <https://github.com/galaxyproject/galaxy/pull/17716>`_
* Fix histories API index_query serialization by `@davelopez <https://github.com/davelopez>`_ in `#17726 <https://github.com/galaxyproject/galaxy/pull/17726>`_
* Fix source history update_time being updated when importing a public history by `@jmchilton <https://github.com/jmchilton>`_ in `#17728 <https://github.com/galaxyproject/galaxy/pull/17728>`_
* Also set extension and metadata on copies of job outputs when finishing job by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17777 <https://github.com/galaxyproject/galaxy/pull/17777>`_
* Fix change_datatype PJA for dynamic collections by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17803 <https://github.com/galaxyproject/galaxy/pull/17803>`_
* Fix archived histories mixing with active in histories list by `@davelopez <https://github.com/davelopez>`_ in `#17856 <https://github.com/galaxyproject/galaxy/pull/17856>`_
============
Enhancements
============
* Python 3.8 as minimum by `@mr-c <https://github.com/mr-c>`_ in `#16954 <https://github.com/galaxyproject/galaxy/pull/16954>`_
* Toward declarative help for Galaxy markdown directives. by `@jmchilton <https://github.com/jmchilton>`_ in `#16979 <https://github.com/galaxyproject/galaxy/pull/16979>`_
* Extend regex groups in stdio regex matches by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#17016 <https://github.com/galaxyproject/galaxy/pull/17016>`_
* Create pydantic model for the return of show operation - get: `/api/jobs/{job_id}` by `@heisner-tillman <https://github.com/heisner-tillman>`_ in `#17153 <https://github.com/galaxyproject/galaxy/pull/17153>`_
* Don't require admin user to list ``/api/tool_data`` by `@jozh2008 <https://github.com/jozh2008>`_ in `#17161 <https://github.com/galaxyproject/galaxy/pull/17161>`_
* Vueifiy History Grids by `@guerler <https://github.com/guerler>`_ in `#17219 <https://github.com/galaxyproject/galaxy/pull/17219>`_
* Reuse test instance during non-integration tests by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17234 <https://github.com/galaxyproject/galaxy/pull/17234>`_
* Migrate models to pydantic 2 by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17262 <https://github.com/galaxyproject/galaxy/pull/17262>`_
* Add ``__KEEP_SUCCESS_DATASETS__`` by `@lldelisle <https://github.com/lldelisle>`_ in `#17294 <https://github.com/galaxyproject/galaxy/pull/17294>`_
* Enable ``warn_unreachable`` mypy option by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17365 <https://github.com/galaxyproject/galaxy/pull/17365>`_
* Combines legacy qv-pattern and advanced filter pattern in history index endpoint by `@guerler <https://github.com/guerler>`_ in `#17368 <https://github.com/galaxyproject/galaxy/pull/17368>`_
* Cancel all active jobs when the user is deleted by `@davelopez <https://github.com/davelopez>`_ in `#17390 <https://github.com/galaxyproject/galaxy/pull/17390>`_
* Update to black 2024 stable style by `@nsoranzo <https://github.com/nsoranzo>`_ in `#17391 <https://github.com/galaxyproject/galaxy/pull/17391>`_
* Purge `groups` and `roles` from DB (for real) by `@davelopez <https://github.com/davelopez>`_ in `#17411 <https://github.com/galaxyproject/galaxy/pull/17411>`_
* Refactor Workflow API routes - Part 1 by `@heisner-tillman <https://github.com/heisner-tillman>`_ in `#17463 <https://github.com/galaxyproject/galaxy/pull/17463>`_
* Consolidate resource grids into tab views by `@guerler <https://github.com/guerler>`_ in `#17487 <https://github.com/galaxyproject/galaxy/pull/17487>`_
* Filter out subworkflow invocations by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17558 <https://github.com/galaxyproject/galaxy/pull/17558>`_
* Restore histories API behavior for `keys` query parameter by `@davelopez <https://github.com/davelopez>`_ in `#17779 <https://github.com/galaxyproject/galaxy/pull/17779>`_
* Fix datasets API custom keys encoding by `@davelopez <https://github.com/davelopez>`_ in `#17793 <https://github.com/galaxyproject/galaxy/pull/17793>`_
-------------------
23.2.1 (2024-02-21)
-------------------
packages/test_base/HISTORY.rst
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24.0.dev0
24.1.dev0
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24.0.0 (2024-04-02)
-------------------
============
Enhancements
============
* port invocation API to fastapi by `@martenson <https://github.com/martenson>`_ in `#16707 <https://github.com/galaxyproject/galaxy/pull/16707>`_
* Python 3.8 as minimum by `@mr-c <https://github.com/mr-c>`_ in `#16954 <https://github.com/galaxyproject/galaxy/pull/16954>`_
* Support for OIDC API Auth and OIDC integration tests by `@nuwang <https://github.com/nuwang>`_ in `#16977 <https://github.com/galaxyproject/galaxy/pull/16977>`_
* Reuse test instance during non-integration tests by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17234 <https://github.com/galaxyproject/galaxy/pull/17234>`_
* API endpoint that allows "changing" the objectstore for "safe" scenarios. by `@jmchilton <https://github.com/jmchilton>`_ in `#17329 <https://github.com/galaxyproject/galaxy/pull/17329>`_
* Update to black 2024 stable style by `@nsoranzo <https://github.com/nsoranzo>`_ in `#17391 <https://github.com/galaxyproject/galaxy/pull/17391>`_
* Allow filtering history datasets by object store ID and quota source. by `@jmchilton <https://github.com/jmchilton>`_ in `#17460 <https://github.com/galaxyproject/galaxy/pull/17460>`_
* Refactor Workflow API routes - Part 1 by `@heisner-tillman <https://github.com/heisner-tillman>`_ in `#17463 <https://github.com/galaxyproject/galaxy/pull/17463>`_
* Filter out subworkflow invocations by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17558 <https://github.com/galaxyproject/galaxy/pull/17558>`_
-------------------
23.2.1 (2024-02-21)
-------------------
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24.0.dev0
24.1.dev0
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-------------------
24.0.0 (2024-04-02)
-------------------
============
Enhancements
============
* Python 3.8 as minimum by `@mr-c <https://github.com/mr-c>`_ in `#16954 <https://github.com/galaxyproject/galaxy/pull/16954>`_
* Update to black 2024 stable style by `@nsoranzo <https://github.com/nsoranzo>`_ in `#17391 <https://github.com/galaxyproject/galaxy/pull/17391>`_
* Type annotation and refactoring of tests by `@nsoranzo <https://github.com/nsoranzo>`_ in `#17484 <https://github.com/galaxyproject/galaxy/pull/17484>`_
-------------------
23.2.1 (2024-02-21)
-------------------
packages/tool_shed/HISTORY.rst
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24.0.dev0
24.1.dev0
---------
-------------------
24.0.0 (2024-04-02)
-------------------
=========
Bug fixes
=========
* Reload built-in converters on toolbox reload by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#17209 <https://github.com/galaxyproject/galaxy/pull/17209>`_
============
Enhancements
============
* Enable ``warn_unreachable`` mypy option by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17365 <https://github.com/galaxyproject/galaxy/pull/17365>`_
-------------------
23.2.1 (2024-02-21)
-------------------
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24.0.dev0
24.1.dev0
---------
-------------------
24.0.0 (2024-04-02)
-------------------
=========
Bug fixes
=========
* xsd: reorder choices for permissive boolean by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#17187 <https://github.com/galaxyproject/galaxy/pull/17187>`_
* Allow for upper case container tags by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#17254 <https://github.com/galaxyproject/galaxy/pull/17254>`_
* Fixes for flake8-bugbear 24.1.17 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#17340 <https://github.com/galaxyproject/galaxy/pull/17340>`_
* Escape pipe character in tool XSD docs by `@neoformit <https://github.com/neoformit>`_ in `#17359 <https://github.com/galaxyproject/galaxy/pull/17359>`_
* XSD schema doc building: quote pipe characters in attribute tables by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#17364 <https://github.com/galaxyproject/galaxy/pull/17364>`_
* Fix IUC best practices links, mention data_source_async in XSD by `@wm75 <https://github.com/wm75>`_ in `#17409 <https://github.com/galaxyproject/galaxy/pull/17409>`_
* Fix data_source and data_source_async bugs by `@wm75 <https://github.com/wm75>`_ in `#17422 <https://github.com/galaxyproject/galaxy/pull/17422>`_
* Add tool XML schema documention for outputs - collection - data by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#17465 <https://github.com/galaxyproject/galaxy/pull/17465>`_
* has_size assertion: implement size (as synonym for value) by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#17490 <https://github.com/galaxyproject/galaxy/pull/17490>`_
* Yaml nested assertions: fix parsing by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#17641 <https://github.com/galaxyproject/galaxy/pull/17641>`_
============
Enhancements
============
* build_mulled: also use namespace for building singularity images by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#15657 <https://github.com/galaxyproject/galaxy/pull/15657>`_
* Python 3.8 as minimum by `@mr-c <https://github.com/mr-c>`_ in `#16954 <https://github.com/galaxyproject/galaxy/pull/16954>`_
* Extend regex groups in stdio regex matches by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#17016 <https://github.com/galaxyproject/galaxy/pull/17016>`_
* Split linters in separate classes by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#17081 <https://github.com/galaxyproject/galaxy/pull/17081>`_
* Add select parameter with options from remote resources by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17087 <https://github.com/galaxyproject/galaxy/pull/17087>`_
* Replace discouraged Mambaforge with Miniforge3 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#17177 <https://github.com/galaxyproject/galaxy/pull/17177>`_
* Clarify the meaning of lexical sorting of discovered datasets by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#17190 <https://github.com/galaxyproject/galaxy/pull/17190>`_
* Migrate models to pydantic 2 by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17262 <https://github.com/galaxyproject/galaxy/pull/17262>`_
* Add element_identifier and ext to inputs config file export by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#17357 <https://github.com/galaxyproject/galaxy/pull/17357>`_
* Enable ``warn_unreachable`` mypy option by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17365 <https://github.com/galaxyproject/galaxy/pull/17365>`_
* Fix type annotation of code using XML etree by `@nsoranzo <https://github.com/nsoranzo>`_ in `#17367 <https://github.com/galaxyproject/galaxy/pull/17367>`_
* Update to black 2024 stable style by `@nsoranzo <https://github.com/nsoranzo>`_ in `#17391 <https://github.com/galaxyproject/galaxy/pull/17391>`_
* Some additional typing for test interactor stuff. by `@jmchilton <https://github.com/jmchilton>`_ in `#17398 <https://github.com/galaxyproject/galaxy/pull/17398>`_
* Allow using tool data bundles as inputs to reference data select parameters by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17435 <https://github.com/galaxyproject/galaxy/pull/17435>`_
* `data_column` parameter: use `column_names` metadata if present by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#17478 <https://github.com/galaxyproject/galaxy/pull/17478>`_
* Fixing data_source tools and incrementing tool profile by `@wm75 <https://github.com/wm75>`_ in `#17515 <https://github.com/galaxyproject/galaxy/pull/17515>`_
* Add `image_diff` comparison method for test output verification using images by `@kostrykin <https://github.com/kostrykin>`_ in `#17556 <https://github.com/galaxyproject/galaxy/pull/17556>`_
* add shm_size based on ShmSize by `@richard-burhans <https://github.com/richard-burhans>`_ in `#17565 <https://github.com/galaxyproject/galaxy/pull/17565>`_
* Record missing outputs as test errors by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#17874 <https://github.com/galaxyproject/galaxy/pull/17874>`_
=============
Other changes
=============
* consistently compare profile versions by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#16492 <https://github.com/galaxyproject/galaxy/pull/16492>`_
-------------------
23.2.1 (2024-02-21)
-------------------
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24.0.dev0
24.1.dev0
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-------------------
24.0.0 (2024-04-02)
-------------------
============
Enhancements
============
* Migrate models to pydantic 2 by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17262 <https://github.com/galaxyproject/galaxy/pull/17262>`_
* Update to black 2024 stable style by `@nsoranzo <https://github.com/nsoranzo>`_ in `#17391 <https://github.com/galaxyproject/galaxy/pull/17391>`_
-------------------
23.2.1 (2024-02-21)
-------------------
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24.0.dev0
24.1.dev0
---------
-------------------
24.0.0 (2024-04-02)
-------------------
=========
Bug fixes
=========
* Optional Reply-to SMTP header in tool error reports by `@neoformit <https://github.com/neoformit>`_ in `#17243 <https://github.com/galaxyproject/galaxy/pull/17243>`_
* Follow-up on #17274 and #17262 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#17302 <https://github.com/galaxyproject/galaxy/pull/17302>`_
* Fixes for flake8-bugbear 24.1.17 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#17340 <https://github.com/galaxyproject/galaxy/pull/17340>`_
============
Enhancements
============
* Add support for Python 3.12 by `@tuncK <https://github.com/tuncK>`_ in `#16796 <https://github.com/galaxyproject/galaxy/pull/16796>`_
* Python 3.8 as minimum by `@mr-c <https://github.com/mr-c>`_ in `#16954 <https://github.com/galaxyproject/galaxy/pull/16954>`_
* Remove web framework dependency from tools by `@davelopez <https://github.com/davelopez>`_ in `#17058 <https://github.com/galaxyproject/galaxy/pull/17058>`_
* Add support for (fast5.tar).xz binary compressed files by `@tuncK <https://github.com/tuncK>`_ in `#17106 <https://github.com/galaxyproject/galaxy/pull/17106>`_
* Reuse test instance during non-integration tests by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17234 <https://github.com/galaxyproject/galaxy/pull/17234>`_
* Add OIDC backend configuration schema and validation by `@uwwint <https://github.com/uwwint>`_ in `#17274 <https://github.com/galaxyproject/galaxy/pull/17274>`_
* Enable ``warn_unreachable`` mypy option by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17365 <https://github.com/galaxyproject/galaxy/pull/17365>`_
* Fix type annotation of code using XML etree by `@nsoranzo <https://github.com/nsoranzo>`_ in `#17367 <https://github.com/galaxyproject/galaxy/pull/17367>`_
* Update to black 2024 stable style by `@nsoranzo <https://github.com/nsoranzo>`_ in `#17391 <https://github.com/galaxyproject/galaxy/pull/17391>`_
* Add `image_diff` comparison method for test output verification using images by `@kostrykin <https://github.com/kostrykin>`_ in `#17556 <https://github.com/galaxyproject/galaxy/pull/17556>`_
-------------------
23.2.1 (2024-02-21)
-------------------
packages/web_apps/HISTORY.rst
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24.0.dev0
24.1.dev0
---------
-------------------
24.0.0 (2024-04-02)
-------------------
=========
Bug fixes
=========
* tus wants a json response from v2.0.0 by `@mira-miracoli <https://github.com/mira-miracoli>`_ in `#17246 <https://github.com/galaxyproject/galaxy/pull/17246>`_
* Fix quotas ID encoding by `@davelopez <https://github.com/davelopez>`_ in `#17335 <https://github.com/galaxyproject/galaxy/pull/17335>`_
* Fixes for flake8-bugbear 24.1.17 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#17340 <https://github.com/galaxyproject/galaxy/pull/17340>`_
* Fix data_source and data_source_async bugs by `@wm75 <https://github.com/wm75>`_ in `#17422 <https://github.com/galaxyproject/galaxy/pull/17422>`_
* Only check access permissions in ``/api/{history_dataset_collection_id}/contents/{dataset_collection_id}`` by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#17444 <https://github.com/galaxyproject/galaxy/pull/17444>`_
* Associate default history with session when creating a new session by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17557 <https://github.com/galaxyproject/galaxy/pull/17557>`_
* Fix tool shed webapp by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17597 <https://github.com/galaxyproject/galaxy/pull/17597>`_
* Don't call ``get_or_create_default_history()`` twice for invalidated sessions by `@nsoranzo <https://github.com/nsoranzo>`_ in `#17613 <https://github.com/galaxyproject/galaxy/pull/17613>`_
* Fix tool panel workflow and favorites button bugs by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#17634 <https://github.com/galaxyproject/galaxy/pull/17634>`_
* Fix DataResult type by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17639 <https://github.com/galaxyproject/galaxy/pull/17639>`_
* Prevent 500 for anon /api/invocations by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17640 <https://github.com/galaxyproject/galaxy/pull/17640>`_
* Don't fail for anon /api/users request by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17645 <https://github.com/galaxyproject/galaxy/pull/17645>`_
* Limit new anon histories by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17657 <https://github.com/galaxyproject/galaxy/pull/17657>`_
* Fix histories API index_query serialization by `@davelopez <https://github.com/davelopez>`_ in `#17726 <https://github.com/galaxyproject/galaxy/pull/17726>`_
* Handle missing indexer for a dataset by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#17736 <https://github.com/galaxyproject/galaxy/pull/17736>`_
* Don't require history to calculate anon disk usage by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17765 <https://github.com/galaxyproject/galaxy/pull/17765>`_
* Fix anon user values again by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17772 <https://github.com/galaxyproject/galaxy/pull/17772>`_
* Fix new default history creation when in remote or single user mode by `@dannon <https://github.com/dannon>`_ in `#17796 <https://github.com/galaxyproject/galaxy/pull/17796>`_
* Return published histories first in display_by_username_and_slug by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17808 <https://github.com/galaxyproject/galaxy/pull/17808>`_
* Fix archived histories mixing with active in histories list by `@davelopez <https://github.com/davelopez>`_ in `#17856 <https://github.com/galaxyproject/galaxy/pull/17856>`_
============
Enhancements
============
* New Workflow List and Card View by `@itisAliRH <https://github.com/itisAliRH>`_ in `#16607 <https://github.com/galaxyproject/galaxy/pull/16607>`_
* port invocation API to fastapi by `@martenson <https://github.com/martenson>`_ in `#16707 <https://github.com/galaxyproject/galaxy/pull/16707>`_
* Python 3.8 as minimum by `@mr-c <https://github.com/mr-c>`_ in `#16954 <https://github.com/galaxyproject/galaxy/pull/16954>`_
* Support for OIDC API Auth and OIDC integration tests by `@nuwang <https://github.com/nuwang>`_ in `#16977 <https://github.com/galaxyproject/galaxy/pull/16977>`_
* Toward declarative help for Galaxy markdown directives. by `@jmchilton <https://github.com/jmchilton>`_ in `#16979 <https://github.com/galaxyproject/galaxy/pull/16979>`_
* Vueify Admin User Grid by `@guerler <https://github.com/guerler>`_ in `#17030 <https://github.com/galaxyproject/galaxy/pull/17030>`_
* Remove web framework dependency from tools by `@davelopez <https://github.com/davelopez>`_ in `#17058 <https://github.com/galaxyproject/galaxy/pull/17058>`_
* Vueify Admin Roles Grid by `@guerler <https://github.com/guerler>`_ in `#17118 <https://github.com/galaxyproject/galaxy/pull/17118>`_
* SA2.0 updates: handling "object is being merged into a Session along the backref cascade path" by `@jdavcs <https://github.com/jdavcs>`_ in `#17122 <https://github.com/galaxyproject/galaxy/pull/17122>`_
* Vueify Admin Groups Grid by `@guerler <https://github.com/guerler>`_ in `#17126 <https://github.com/galaxyproject/galaxy/pull/17126>`_
* Towards SQLAlchemy 2.0: fix last cases of RemovedIn20Warning by `@jdavcs <https://github.com/jdavcs>`_ in `#17132 <https://github.com/galaxyproject/galaxy/pull/17132>`_
* Vueify Admin Forms and Quota grids by `@guerler <https://github.com/guerler>`_ in `#17141 <https://github.com/galaxyproject/galaxy/pull/17141>`_
* Migrate dataset extra files store to Pinia by `@davelopez <https://github.com/davelopez>`_ in `#17145 <https://github.com/galaxyproject/galaxy/pull/17145>`_
* Create pydantic model for the return of show operation - get: `/api/jobs/{job_id}` by `@heisner-tillman <https://github.com/heisner-tillman>`_ in `#17153 <https://github.com/galaxyproject/galaxy/pull/17153>`_
* Remove legacy tool versions list from admin panel by `@guerler <https://github.com/guerler>`_ in `#17155 <https://github.com/galaxyproject/galaxy/pull/17155>`_
* Don't require admin user to list ``/api/tool_data`` by `@jozh2008 <https://github.com/jozh2008>`_ in `#17161 <https://github.com/galaxyproject/galaxy/pull/17161>`_
* Drop fastapi-utils.InferringRouter in favor of fastapi.APIRouter by `@jdavcs <https://github.com/jdavcs>`_ in `#17184 <https://github.com/galaxyproject/galaxy/pull/17184>`_
* Vendorize fastapi-utls.cbv by `@jdavcs <https://github.com/jdavcs>`_ in `#17205 <https://github.com/galaxyproject/galaxy/pull/17205>`_
* Vueifiy History Grids by `@guerler <https://github.com/guerler>`_ in `#17219 <https://github.com/galaxyproject/galaxy/pull/17219>`_
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#17235 <https://github.com/galaxyproject/galaxy/pull/17235>`_
* Refactor two of the missing invocation routes to FastAPI by `@heisner-tillman <https://github.com/heisner-tillman>`_ in `#17237 <https://github.com/galaxyproject/galaxy/pull/17237>`_
* Allow job files to consume TUS uploads by `@jmchilton <https://github.com/jmchilton>`_ in `#17242 <https://github.com/galaxyproject/galaxy/pull/17242>`_
* Migrate models to pydantic 2 by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17262 <https://github.com/galaxyproject/galaxy/pull/17262>`_
* Adds delete, purge and undelete batch operations to History Grid by `@guerler <https://github.com/guerler>`_ in `#17282 <https://github.com/galaxyproject/galaxy/pull/17282>`_
* Fix any type for tool_data_file_path by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17293 <https://github.com/galaxyproject/galaxy/pull/17293>`_
* API endpoint that allows "changing" the objectstore for "safe" scenarios. by `@jmchilton <https://github.com/jmchilton>`_ in `#17329 <https://github.com/galaxyproject/galaxy/pull/17329>`_
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#17333 <https://github.com/galaxyproject/galaxy/pull/17333>`_
* Combines legacy qv-pattern and advanced filter pattern in history index endpoint by `@guerler <https://github.com/guerler>`_ in `#17368 <https://github.com/galaxyproject/galaxy/pull/17368>`_
* Update to black 2024 stable style by `@nsoranzo <https://github.com/nsoranzo>`_ in `#17391 <https://github.com/galaxyproject/galaxy/pull/17391>`_
* Replaces Trackster Grids with Data Dialog, Removes Phyloviz, Circster and Sweepster by `@guerler <https://github.com/guerler>`_ in `#17415 <https://github.com/galaxyproject/galaxy/pull/17415>`_
* Removes outdated Grid controller and backbone modules by `@guerler <https://github.com/guerler>`_ in `#17434 <https://github.com/galaxyproject/galaxy/pull/17434>`_
* Allow using tool data bundles as inputs to reference data select parameters by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17435 <https://github.com/galaxyproject/galaxy/pull/17435>`_
* Modernize bits and pieces of storage display by `@jmchilton <https://github.com/jmchilton>`_ in `#17436 <https://github.com/galaxyproject/galaxy/pull/17436>`_
* UI for "relocating" a dataset to a new object store (when safe) by `@jmchilton <https://github.com/jmchilton>`_ in `#17437 <https://github.com/galaxyproject/galaxy/pull/17437>`_
* Refactor Workflow API routes - Part 1 by `@heisner-tillman <https://github.com/heisner-tillman>`_ in `#17463 <https://github.com/galaxyproject/galaxy/pull/17463>`_
* Consolidate resource grids into tab views by `@guerler <https://github.com/guerler>`_ in `#17487 <https://github.com/galaxyproject/galaxy/pull/17487>`_
* Display workflow invocation counts. by `@jmchilton <https://github.com/jmchilton>`_ in `#17488 <https://github.com/galaxyproject/galaxy/pull/17488>`_
* Removes legacy history xml makos by `@guerler <https://github.com/guerler>`_ in `#17505 <https://github.com/galaxyproject/galaxy/pull/17505>`_
* add encode ID API endpoint by `@mira-miracoli <https://github.com/mira-miracoli>`_ in `#17510 <https://github.com/galaxyproject/galaxy/pull/17510>`_
* Fixing data_source tools and incrementing tool profile by `@wm75 <https://github.com/wm75>`_ in `#17515 <https://github.com/galaxyproject/galaxy/pull/17515>`_
* Filter out subworkflow invocations by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17558 <https://github.com/galaxyproject/galaxy/pull/17558>`_
* Links to individual invocations. by `@jmchilton <https://github.com/jmchilton>`_ in `#17566 <https://github.com/galaxyproject/galaxy/pull/17566>`_
* Restore histories API behavior for `keys` query parameter by `@davelopez <https://github.com/davelopez>`_ in `#17779 <https://github.com/galaxyproject/galaxy/pull/17779>`_
* Fix datasets API custom keys encoding by `@davelopez <https://github.com/davelopez>`_ in `#17793 <https://github.com/galaxyproject/galaxy/pull/17793>`_
-------------------
23.2.1 (2024-02-21)
-------------------
packages/web_framework/HISTORY.rst
+18 -1
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@@ -4,11 +4,28 @@ History
.. to_doc
---------
24.0.dev0
24.1.dev0
---------
-------------------
24.0.0 (2024-04-02)
-------------------
============
Enhancements
============
* Python 3.8 as minimum by `@mr-c <https://github.com/mr-c>`_ in `#16954 <https://github.com/galaxyproject/galaxy/pull/16954>`_
* Vueify Admin User Grid by `@guerler <https://github.com/guerler>`_ in `#17030 <https://github.com/galaxyproject/galaxy/pull/17030>`_
* Remove web framework dependency from tools by `@davelopez <https://github.com/davelopez>`_ in `#17058 <https://github.com/galaxyproject/galaxy/pull/17058>`_
* Vueify Admin Groups Grid by `@guerler <https://github.com/guerler>`_ in `#17126 <https://github.com/galaxyproject/galaxy/pull/17126>`_
* Migrate models to pydantic 2 by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17262 <https://github.com/galaxyproject/galaxy/pull/17262>`_
* Update to black 2024 stable style by `@nsoranzo <https://github.com/nsoranzo>`_ in `#17391 <https://github.com/galaxyproject/galaxy/pull/17391>`_
* Removes outdated Grid controller and backbone modules by `@guerler <https://github.com/guerler>`_ in `#17434 <https://github.com/galaxyproject/galaxy/pull/17434>`_
-------------------
23.2.1 (2024-02-21)
-------------------
packages/web_stack/HISTORY.rst
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@@ -4,11 +4,22 @@ History
.. to_doc
---------
24.0.dev0
24.1.dev0
---------
-------------------
24.0.0 (2024-04-02)
-------------------
============
Enhancements
============
* Update to black 2024 stable style by `@nsoranzo <https://github.com/nsoranzo>`_ in `#17391 <https://github.com/galaxyproject/galaxy/pull/17391>`_
-------------------
23.2.1 (2024-02-21)
-------------------