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Update Python dependencies

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by running `make update-dependencies`.
This commit is contained in:
galaxybot
2025-12-16 12:34:09 +00:00
committed by Nicola Soranzo
parent d6754e0b85
commit 1aec8006fa
5 changed files with 18 additions and 18 deletions
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lib/galaxy/dependencies/dev-requirements.txt
+4 -4
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@@ -20,7 +20,7 @@ botocore==1.41.5
build==1.3.0
cachecontrol==0.14.3 ; python_full_version < '3.10'
cachecontrol==0.14.4 ; python_full_version >= '3.10'
cachetools==6.2.2
cachetools==6.2.3
cattrs==25.3.0
certifi==2025.11.12
cffi==2.0.0 ; (implementation_name != 'pypy' and os_name == 'nt') or platform_python_implementation != 'PyPy'
@@ -51,7 +51,7 @@ filelock==3.19.1 ; python_full_version < '3.10'
filelock==3.20.0 ; python_full_version >= '3.10'
fluent-logger==0.11.1
fonttools==4.60.2 ; python_full_version < '3.10'
fonttools==4.61.0 ; python_full_version >= '3.10'
fonttools==4.61.1 ; python_full_version >= '3.10'
frozenlist==1.8.0
galaxy-release-util==0.3.1
greenlet==3.2.4 ; python_full_version < '3.10'
@@ -92,7 +92,7 @@ markdown-it-py==3.0.0
markdown-it-reporter==0.0.2
markupsafe==3.0.3
matplotlib==3.9.4 ; python_full_version < '3.10'
matplotlib==3.10.7 ; python_full_version >= '3.10'
matplotlib==3.10.8 ; python_full_version >= '3.10'
mdit-py-plugins==0.4.2 ; python_full_version < '3.10'
mdit-py-plugins==0.5.0 ; python_full_version >= '3.10'
mdurl==0.1.2
@@ -235,7 +235,7 @@ typing-extensions==4.15.0
tzdata==2025.2 ; sys_platform == 'win32'
url-normalize==2.2.1
urllib3==1.26.20 ; python_full_version < '3.10'
urllib3==2.6.1 ; python_full_version >= '3.10'
urllib3==2.6.2 ; python_full_version >= '3.10'
watchdog==6.0.0
wcwidth==0.2.14
webencodings==0.5.1 ; python_full_version < '3.10'
lib/galaxy/dependencies/pinned-lint-requirements.txt
+1 -1
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@@ -4,4 +4,4 @@ flake8-bugbear==24.12.12
mccabe==0.7.0
pycodestyle==2.14.0
pyflakes==3.4.0
ruff==0.14.8
ruff==0.14.9
lib/galaxy/dependencies/pinned-requirements.txt
+5 -5
View File
@@ -38,7 +38,7 @@ botocore==1.41.5
bx-python==0.14.0
cachecontrol==0.14.3 ; python_full_version < '3.10'
cachecontrol==0.14.4 ; python_full_version >= '3.10'
cachetools==6.2.2
cachetools==6.2.3
celery==5.6.0
certifi==2025.11.12
cffi==2.0.0 ; implementation_name == 'pypy' or platform_python_implementation != 'PyPy'
@@ -72,7 +72,7 @@ edam-ontology==1.25.3
email-validator==2.3.0
et-xmlfile==2.0.0
exceptiongroup==1.3.1
fastapi==0.124.0
fastapi==0.124.4
filelock==3.19.1 ; python_full_version < '3.10'
filelock==3.20.0 ; python_full_version >= '3.10'
fissix==24.4.24
@@ -216,7 +216,7 @@ social-auth-core==4.7.0 ; python_full_version < '3.10'
social-auth-core==4.8.1 ; python_full_version >= '3.10'
sortedcontainers==2.4.0
spython==0.3.14
sqlalchemy==2.0.44
sqlalchemy==2.0.45
sqlparse==0.5.4
starlette==0.49.3 ; python_full_version < '3.10'
starlette==0.50.0 ; python_full_version >= '3.10'
@@ -230,7 +230,7 @@ tifffile==2025.5.10 ; python_full_version == '3.10.*'
tifffile==2025.10.16 ; python_full_version >= '3.11'
tinydb==4.8.2
tomli==2.3.0 ; python_full_version < '3.11'
tornado==6.5.2
tornado==6.5.3
tqdm==4.67.1
tuspy==1.1.0
tuspyserver==4.2.3
@@ -240,7 +240,7 @@ tzdata==2025.2
tzlocal==5.3.1
ubiquerg==0.8.2
urllib3==1.26.20 ; python_full_version < '3.10'
urllib3==2.6.1 ; python_full_version >= '3.10'
urllib3==2.6.2 ; python_full_version >= '3.10'
uvicorn==0.38.0
uvloop==0.22.1
vine==5.1.0
lib/galaxy/dependencies/pinned-test-requirements.txt
+4 -4
View File
@@ -13,7 +13,7 @@ boto3==1.41.5
botocore==1.41.5
cachecontrol==0.14.3 ; python_full_version < '3.10'
cachecontrol==0.14.4 ; python_full_version >= '3.10'
cachetools==6.2.2
cachetools==6.2.3
cattrs==25.3.0
certifi==2025.11.12
cffi==2.0.0 ; implementation_name != 'pypy' and os_name == 'nt'
@@ -39,7 +39,7 @@ filelock==3.19.1 ; python_full_version < '3.10'
filelock==3.20.0 ; python_full_version >= '3.10'
fluent-logger==0.11.1
fonttools==4.60.2 ; python_full_version < '3.10'
fonttools==4.61.0 ; python_full_version >= '3.10'
fonttools==4.61.1 ; python_full_version >= '3.10'
frozenlist==1.8.0
greenlet==3.2.4 ; python_full_version < '3.10'
greenlet==3.3.0 ; python_full_version >= '3.10'
@@ -69,7 +69,7 @@ lxml==6.0.2
markdown-it-py==3.0.0
markupsafe==3.0.3
matplotlib==3.9.4 ; python_full_version < '3.10'
matplotlib==3.10.7 ; python_full_version >= '3.10'
matplotlib==3.10.8 ; python_full_version >= '3.10'
mdurl==0.1.2
mirakuru==2.6.1 ; python_full_version < '3.10'
mirakuru==3.0.1 ; python_full_version >= '3.10'
@@ -181,7 +181,7 @@ typing-extensions==4.15.0
tzdata==2025.2 ; sys_platform == 'win32'
url-normalize==2.2.1
urllib3==1.26.20 ; python_full_version < '3.10'
urllib3==2.6.1 ; python_full_version >= '3.10'
urllib3==2.6.2 ; python_full_version >= '3.10'
watchdog==6.0.0
wcwidth==0.2.14
webencodings==0.5.1 ; python_full_version < '3.10'
lib/galaxy/dependencies/pinned-typecheck-requirements.txt
+4 -4
View File
@@ -1,8 +1,8 @@
# This file was autogenerated by uv via the following command:
# uv export --frozen --no-annotate --no-hashes --only-group=typecheck
annotated-types==0.7.0
boto3-stubs==1.42.5
botocore-stubs==1.42.5
boto3-stubs==1.42.9
botocore-stubs==1.42.9
cffi==2.0.0 ; platform_python_implementation != 'PyPy'
cryptography==46.0.3
librt==0.7.3
@@ -15,7 +15,7 @@ pycparser==2.23 ; implementation_name != 'PyPy' and platform_python_implementati
pydantic==2.12.5
pydantic-core==2.41.5
tomli==2.3.0 ; python_full_version < '3.11'
types-awscrt==0.29.2
types-awscrt==0.30.0
types-bleach==6.3.0.20251115
types-boto==2.49.18.20241019
types-contextvars==2.4.7.3
@@ -36,4 +36,4 @@ types-urllib3==1.26.25.14 ; python_full_version < '3.10'
types-webencodings==0.5.0.20251108
typing-extensions==4.15.0
typing-inspection==0.4.2
urllib3==2.6.1 ; python_full_version >= '3.10'
urllib3==2.6.2 ; python_full_version >= '3.10'