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Merge branch 'release_23.2' into release_24.0

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mvdbeek
2024-04-09 15:57:55 +02:00
parent f9806acde3 e35ea08c9b
commit 1a39c618d1
1 changed files with 10 additions and 1 deletions
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lib/galaxy/datatypes/converters/gz_to_uncompressed.xml
+10 -1
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@@ -6,7 +6,7 @@ gzip -dcf '$input1' > '$output1'
<configfiles>
<configfile name="ext_config">{"output1": {
"name": "${input1.name[0:-len('.gz')] if $input1.name.endswith('.gz') else $input1.name} uncompressed",
"ext": "${input1.ext[0:-len('.gz')] if $input1.ext != 'vcf_bgzip' else 'vcf'}"
"ext": "${'vcf' if $input1.ext == 'vcf_bgzip' else $input1.ext[0:-len('.gz')] if $input1.ext.endswith('.gz') else $input1.ext}"
}}</configfile>
</configfiles>
<inputs>
@@ -21,6 +21,15 @@ gzip -dcf '$input1' > '$output1'
<param name="input1" value="test.vcf.gz" ftype="vcf_bgzip"/>
<output name="output1" file="test.vcf" ftype="vcf"/>
</test>
<test>
<param name="input1" value="1.fasta.gz" ftype="fasta.gz"/>
<output name="output1" file="1.fasta" ftype="fasta"/>
</test>
<!-- Test input with wrong format -->
<test>
<param name="input1" value="1.fasta.gz" ftype="fasta"/>
<output name="output1" file="1.fasta" ftype="fasta"/>
</test>
</tests>
<help>
</help>