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Skip bundles that don't match data table definition

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Fixes https://github.com/galaxyproject/galaxy/issues/18749
This commit is contained in:
mvdbeek
2025-02-19 15:05:35 +01:00
parent c3cf80fc75
commit 172ef05f26
1 changed files with 11 additions and 3 deletions
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lib/galaxy/tools/parameters/dynamic_options.py
+11 -3
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@@ -807,11 +807,19 @@ class DynamicOptions:
by_dbkey.update(table_entries)
for data_table_entry in by_dbkey.values():
field_entry = []
for column_key in self.tool_data_table.columns.keys():
field_entry.append(data_table_entry[column_key])
if hda := data_table_entry.get("__hda__"):
field_entry.append(hda)
fields.append(field_entry)
missing_columns = False
for column_key in self.tool_data_table.columns.keys():
if column_key not in data_table_entry:
# currrent data table definition (as in self.tool_data_table)
# may not match against the data manager bundle.
# Breaking here fixes https://github.com/galaxyproject/galaxy/issues/18749.
missing_columns = True
break
field_entry.append(data_table_entry[column_key])
if not missing_columns:
fields.append(field_entry)
return fields
@staticmethod