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Enhance bfast to utilize GALAXY_SLOTS configuration when available.

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John Chilton
2013-11-05 13:46:06 -06:00
parent 1614f791c1
commit 162e4de0e1
1 changed files with 1 additions and 1 deletions
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tools/sr_mapping/bfast_wrapper.xml
+1 -1
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@@ -1,7 +1,7 @@
<tool id="bfast_wrapper" name="Map with BFAST" version="0.1.3">
<description></description>
<command interpreter="python">bfast_wrapper.py
--numThreads="4" ##HACK: hardcode numThreads for now, should come from a location file
--numThreads="\${GALAXY_SLOTS:-4}"
--fastq="$input1"
#if $input1.extension.startswith( "fastqcs" ):
##if extention starts with fastqcs, then we have a color space file