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This commit is contained in:
Oleg Zharkov
2021-02-08 16:09:37 +01:00
parent f6623d3a14
commit 15b131f02e
1 changed files with 28 additions and 2 deletions
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lib/galaxy/managers/markdown_util.py
+28 -2
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@@ -386,8 +386,22 @@ class ToBasicMarkdownDirectiveHandler(GalaxyInternalMarkdownDirectiveHandler):
def handle_dataset_as_image(self, line, hda):
dataset = hda.dataset
print("!!!!!!!!!!!")
print("!!!!!!!!!!!")
print("!!!!!!!!!!!")
print("!!!!!!!!!!!")
print("!!!!!!!!!!!")
print("!!!!!!!!!!!")
print("!!!!!!!!!!!")
print(line)
name = hda.name or ''
with open(dataset.file_name, "rb") as f:
if "path" in line:
file = os.path.join(hda.extra_files_path, 'GSM461178_untreat_paired_subset_1_fastq_fastqc/Images/per_sequence_quality.png')
else:
file = dataset.file_name
with open(file, "rb") as f:
base64_image_data = base64.b64encode(f.read()).decode("utf-8")
rval = (f"![{name}](data:image/png;base64,{base64_image_data})", True)
return rval
@@ -552,6 +566,17 @@ def to_pdf(trans, basic_markdown, css_paths=None) -> bytes:
css_paths = css_paths or []
as_html = to_html(basic_markdown)
directory = tempfile.mkdtemp('gxmarkdown')
print("!!!!!!!!!!1")
print("!!!!!!!!!!1")
print("!!!!!!!!!!1")
print("!!!!!!!!!!1")
print("!!!!!!!!!!1")
print("!!!!!!!!!!1")
print("!!!!!!!!!!1")
print("!!!!!!!!!!1")
print("!!!!!!!!!!1")
print("!!!!!!!!!!1")
print(directory)
index = os.path.join(directory, "index.html")
try:
output_file = codecs.open(index, "w", encoding="utf-8", errors="xmlcharrefreplace")
@@ -568,7 +593,8 @@ def to_pdf(trans, basic_markdown, css_paths=None) -> bytes:
# font_config = FontConfiguration()
# stylesheets=[css], font_config=font_config
finally:
shutil.rmtree(directory)
print()
# shutil.rmtree(directory)
def _check_can_convert_to_pdf_or_raise():