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Update tool_list to reflect recent change in use of envirnoment variables

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tool_list.py now makese use of GALAXY_TEST_TOOL_CONF and exits throwing an appropriate error
This commit is contained in:
Saket Choudhary
2014-09-24 23:10:51 -07:00
parent 6f8fbf66b9
commit 1314ff25a2
1 changed files with 8 additions and 2 deletions
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tool_list.py
+8 -2
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@@ -1,9 +1,15 @@
import os,sys
import os
import sys
#--------read tool_conf.xml to get all the tool xml file names-----------
onoff = 1
tool_list = []
for line in open("tool_conf.xml", "r"):
tool_conf_file = os.environ.get( 'GALAXY_TEST_TOOL_CONF', 'config/tool_conf.xml' )
if not os.path.isfile(tool_conf_file):
sys.stderr.write( "Tool config file not found: {}\n".format(tool_conf_file) )
sys.exit(1)
for line in open(tool_conf_file, "r"):
if line.find("<!--") != -1:
onoff = 0
if line.find("file") != -1 and onoff==1: