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Use pytest-cov for testing coverage

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This commit is contained in:
mvdbeek
2018-08-25 14:18:06 +02:00
parent 1c64cdd674
commit 1152a19fd2
1 changed files with 14 additions and 2 deletions
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run_tests.sh
+14 -2
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@@ -273,6 +273,7 @@ DOCKER_DEFAULT_IMAGE='galaxy/testing-base:18.09.0'
test_script="./scripts/functional_tests.py"
report_file="run_functional_tests.html"
coverage_arg=""
xunit_report_file=""
structured_data_report_file=""
with_framework_test_tools_arg=""
@@ -368,6 +369,7 @@ do
api_script="./test/api"
shift 1
fi
coverage_file="api_coverage.xml"
;;
-selenium|--selenium)
with_framework_test_tools_arg="-with_framework_test_tools"
@@ -425,6 +427,7 @@ do
with_framework_test_tools_arg="-with_framework_test_tools"
test_script="pytest"
report_file="run_framework_tests.html"
coverage_file="framework_coverage.xml"
framework_test=1;
shift 1
;;
@@ -433,6 +436,7 @@ do
with_framework_test_tools_arg="-with_main_tools"
test_script="pytest"
report_file="run_framework_tests.html"
coverage_file="main_tools_coverage.xml"
framework_test=1;
shift 1
;;
@@ -440,6 +444,7 @@ do
marker="-m data_manager"
test_script="pytest"
report_file="run_data_managers_tests.html"
coverage_file="data_managers_coverage.xml"
data_managers_test=1;
shift 1
;;
@@ -448,6 +453,7 @@ do
marker="-m tool"
test_script="pytest"
report_file="run_migrated_tests.html"
coverage_file="migrated_coverage.xml"
migrated_test=1;
shift
;;
@@ -456,6 +462,7 @@ do
marker="-m tool"
test_script="pytest"
report_file="run_installed_tests.html"
coverage_file="installed_coverage.xml"
installed_test=1;
shift
;;
@@ -515,6 +522,7 @@ do
unit_extra="$unit_extra lib test/unit"
shift 1
fi
coverage_file="unit_coverage.xml"
;;
-i|-integration|--integration)
test_script="pytest"
@@ -525,6 +533,7 @@ do
else
integration_extra="./test/integration"
shift 1
coverage_file="integration_coverage.xml"
fi
;;
--no_cleanup)
@@ -613,7 +622,7 @@ elif [ -n "$api_script" ]; then
elif [ -n "$section_id" ]; then
extra_args=`python tool_list.py $section_id`
elif [ -n "$unit_extra" ]; then
extra_args="--with-doctest $unit_extra"
extra_args="$unit_extra"
elif [ -n "$integration_extra" ]; then
extra_args="$integration_extra"
elif [ -n "$test_target" ] ; then
@@ -651,7 +660,10 @@ if [ "$with_framework_test_tools_arg" ]; then
export GALAXY_TEST_TOOL_CONF
fi
if [ "$test_script" = 'pytest' ]; then
python -m "$test_script" -v --html "$report_file" $xunit_args $extra_args "$@"
if [ "$coverage_arg" = "--with_coverage" ]; then
coverage_arg="--cov-report term --cov-report xml:cov-unit.xml --cov=lib"
fi
"$test_script" -v --html "$report_file" $coverage_arg $xunit_args $extra_args "$@"
else
python $test_script $coverage_arg -v --with-nosehtml --html-report-file $report_file $xunit_args $structured_data_args $extra_args "$@"
fi