Operations validate metadata column assignments now before tool would run.

This commit is contained in:
Ian Schenck
2007-05-16 17:48:06 +00:00
parent 679af2e562
commit 0f3f301db4
+12 -1
View File
@@ -15,9 +15,19 @@ def validate_input( trans, error_map, param_values, page_param_map ):
data_params = 0
for name, param in page_param_map.iteritems():
if isinstance( param, DataToolParameter ):
# for each dataset parameter
if param_values.get(name, None) != None:
dbkeys.add( param_values[name].dbkey )
data_params += 1
# check meta data
try:
param = param_values[name]
startCol = int( param.metadata.startCol )
endCol = int( param.metadata.endCol )
chromCol = int( param.metadata.chromCol )
strandCol = int ( param.metadata.strandCol )
except:
error_map[name] = "The attributes of this dataset are not the correct format."
data_param_names.add( name )
if len( dbkeys ) > 1:
for name in data_param_names:
@@ -25,7 +35,8 @@ def validate_input( trans, error_map, param_values, page_param_map ):
"this dataset is linked to build '%s'" % param_values[name].dbkey
if data_params != len(data_param_names):
for name in data_param_names:
error_map[name] = "A data of the appropriate type is required"
error_map[name] = "A dataset of the appropriate type is required"
def exec_after_process(app, inp_data, out_data, param_dict, tool=None, stdout=None, stderr=None):
"""Verify the output data after each run"""