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activate SnpSiftDbNSFP and dbnsfp.tabular

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This commit is contained in:
Bjoern Gruening
2015-01-16 22:08:29 +01:00
parent b3f4cd74ea
commit 0f0364e9fa
1 changed files with 15 additions and 11 deletions
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config/datatypes_conf.xml.sample
+15 -11
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@@ -113,7 +113,7 @@
<converter file="interval_to_bed12_converter.xml" target_datatype="bed12"/>
<converter file="interval_to_bgzip_converter.xml" target_datatype="bgzip"/>
<converter file="interval_to_tabix_converter.xml" target_datatype="tabix" depends_on="bgzip"/>
<converter file="interval_to_bigwig_converter.xml" target_datatype="bigwig"/>
<converter file="interval_to_bigwig_converter.xml" target_datatype="bigwig"/>
<!-- <display file="ucsc/interval_as_bed.xml" inherit="True" /> -->
<display file="ensembl/ensembl_interval_as_bed.xml" inherit="True"/>
<display file="gbrowse/gbrowse_interval_as_bed.xml" inherit="True"/>
@@ -151,11 +151,11 @@
<datatype extension="mafcustomtrack" type="galaxy.datatypes.sequence:MafCustomTrack">
<display file="ucsc/maf_customtrack.xml" />
</datatype>
<datatype extension="encodepeak" type="galaxy.datatypes.interval:ENCODEPeak" display_in_upload="True">
<converter file="encodepeak_to_tabix_converter.xml" target_datatype="tabix" depends_on="bgzip"/>
<converter file="encodepeak_to_bgzip_converter.xml" target_datatype="bgzip"/>
<converter file="bed_gff_or_vcf_to_bigwig_converter.xml" target_datatype="bigwig"/>
</datatype>
<datatype extension="encodepeak" type="galaxy.datatypes.interval:ENCODEPeak" display_in_upload="True">
<converter file="encodepeak_to_tabix_converter.xml" target_datatype="tabix" depends_on="bgzip"/>
<converter file="encodepeak_to_bgzip_converter.xml" target_datatype="bgzip"/>
<converter file="bed_gff_or_vcf_to_bigwig_converter.xml" target_datatype="bigwig"/>
</datatype>
<datatype extension="pdf" type="galaxy.datatypes.images:Pdf" mimetype="application/pdf"/>
<datatype extension="pileup" type="galaxy.datatypes.tabular:Pileup" display_in_upload="true">
<converter file="interval_to_bgzip_converter.xml" target_datatype="bgzip"/>
@@ -171,13 +171,17 @@
<datatype extension="qual454" type="galaxy.datatypes.qualityscore:QualityScore454" display_in_upload="true"/>
<datatype extension="Roadmaps" type="galaxy.datatypes.assembly:Roadmaps" display_in_upload="false"/>
<datatype extension="sam" type="galaxy.datatypes.tabular:Sam" display_in_upload="true">
<converter file="sam_to_bam.xml" target_datatype="bam"/>
<converter file="sam_to_bigwig_converter.xml" target_datatype="bigwig"/>
</datatype>
<converter file="sam_to_bam.xml" target_datatype="bam"/>
<converter file="sam_to_bigwig_converter.xml" target_datatype="bigwig"/>
</datatype>
<datatype extension="scf" type="galaxy.datatypes.binary:Scf" mimetype="application/octet-stream" display_in_upload="true" description="A binary sequence file in 'scf' format with a '.scf' file extension. You must manually select this 'File Format' when uploading the file." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#Scf"/>
<datatype extension="Sequences" type="galaxy.datatypes.assembly:Sequences" display_in_upload="false"/>
<datatype extension="snpeffdb" type="galaxy.datatypes.snpeff:SnpEffDb" display_in_upload="True"/>
<datatype extension="snpeffdbv4" type="galaxy.datatypes.snpeff:SnpEffDb" subclass="True" display_in_upload="True"/>
<datatype extension="snpeffdb" type="galaxy.datatypes.text:SnpEffDb" display_in_upload="True"/>
<datatype extension="snpeffdbv4" type="galaxy.datatypes.text:SnpEffDb" subclass="True" display_in_upload="True"/>
<datatype extension="snpsiftdbnsfp" type="galaxy.datatypes.txt:SnpSiftDbNSFP" display_in_upload="True"/>
<datatype extension="dbnsfp.tabular" type="galaxy.datatypes.tabular:Tabular" subclass="True" display_in_upload="True">
<converter file="tabular_to_dbnsfp.xml" target_datatype="snpsiftdbnsfp"/>
</datatype>
<datatype extension="sff" type="galaxy.datatypes.binary:Sff" mimetype="application/octet-stream" display_in_upload="true" description="A binary file in 'Standard Flowgram Format' with a '.sff' file extension." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#Sff"/>
<datatype extension="svg" type="galaxy.datatypes.images:Image" mimetype="image/svg+xml"/>
<datatype extension="taxonomy" type="galaxy.datatypes.tabular:Taxonomy" display_in_upload="true"/>