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Merge pull request #20354 from elmedjadjirayane/locuszoom-vis

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Add LocusZoom Visualization
This commit is contained in:
Aysam Guerler
2025-06-23 20:44:49 -04:00
committed by GitHub
parent 99e352a3d0 249dcdbf3e
commit 0c02c27cc1
2 changed files with 7 additions and 0 deletions
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client/visualizations.yml
+3
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@@ -39,6 +39,9 @@ jupyterlite:
kepler:
package: "@galaxyproject/kepler"
version: 0.0.3
locuszoom:
package: "@galaxyproject/locuszoom"
version: 0.0.6
molstar:
package: "@galaxyproject/molstar"
version: 0.0.2
lib/galaxy/config/sample/datatypes_conf.xml.sample
+4
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@@ -597,6 +597,10 @@
<datatype extension="bed_tabix.gz" type="galaxy.datatypes.interval:BedTabix" mimetype="application/octet-stream" display_in_upload="true"/>
<datatype extension="gff_tabix.gz" type="galaxy.datatypes.interval:GffTabix" mimetype="application/octet-stream" display_in_upload="true"/>
<datatype extension="bgzip" type="galaxy.datatypes.binary:CompressedArchive" subclass="true" display_in_upload="true"/>
<!-- GWAS results datatypes to be used with locuszoom visualization plugin -->
<datatype extension="gwas_bgzip" type="galaxy.datatypes.binary:CompressedArchive" subclass="true" display_in_upload="true"/>
<datatype extension="gwas_tabix.gz" type="galaxy.datatypes.binary:CompressedArchive" subclass="true" display_in_upload="true"/>
<!-- -->
<datatype extension="vcf_bgzip" type="galaxy.datatypes.tabular:VcfGz" display_in_upload="true">
<display file="igv/vcf.xml"/>
<converter file="vcf_bgzip_to_tabix_converter.xml" target_datatype="tabix"/>