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rma: add RMA6 data type (MEGAN6 read-match archive)
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@@ -54,6 +54,7 @@
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<converter file="len_to_linecount.xml" target_datatype="linecount"/>
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</datatype>
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<datatype extension="daa" type="galaxy.datatypes.binary:DAA" display_in_upload="true"/>
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<datatype extension="rma" type="galaxy.datatypes.binary:RMA" display_in_upload="true"/>
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<datatype extension="dmnd" type="galaxy.datatypes.binary:DMND" display_in_upload="false"/>
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<datatype extension="idat" type="galaxy.datatypes.binary:Idat" display_in_upload="true"/>
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<datatype extension="bigbed" type="galaxy.datatypes.binary:BigBed" mimetype="application/octet-stream" display_in_upload="true">
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@@ -734,6 +735,7 @@
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<sniffer type="galaxy.datatypes.binary:Sra"/>
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<sniffer type="galaxy.datatypes.binary:NetCDF"/>
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<sniffer type="galaxy.datatypes.binary:DAA"/>
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<sniffer type="galaxy.datatypes.binary:RMA"/>
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<sniffer type="galaxy.datatypes.binary:DMND"/>
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<sniffer type="galaxy.datatypes.binary:Fast5ArchiveGz"/>
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<sniffer type="galaxy.datatypes.binary:Fast5ArchiveBz2"/>
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@@ -2168,6 +2168,29 @@ class DAA(Binary):
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return f.read(8) == self._magic
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class RMA6(Binary):
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"""
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Class describing an RMA6 (MEGAN6 read-match archive) file
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>>> from galaxy.datatypes.sniff import get_test_fname
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>>> fname = get_test_fname('diamond.rma')
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>>> DAA().sniff(fname)
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True
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>>> fname = get_test_fname('interval.interval')
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>>> DAA().sniff(fname)
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False
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"""
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file_ext = "rma6"
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def __init__(self, **kwd):
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Binary.__init__(self, **kwd)
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self._magic = binascii.unhexlify("000003f600000006")
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def sniff(self, filename):
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# The first 8 bytes of any daa file are 0x3c0e53476d3ee36b
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with open(filename, 'rb') as f:
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return f.read(8) == self._magic
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class DMND(Binary):
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"""
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Class describing an DMND file
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Binary file not shown.
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