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Forgot to fix the comments when I fixed the tool behavior.

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Greg Von Kuster
2008-05-29 20:45:41 +00:00
parent b1308a3c62
commit 097a879588
1 changed files with 2 additions and 2 deletions
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tools/metag_tools/fastq_to_fasta_qual.py
+2 -2
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@@ -25,11 +25,11 @@ def stop_err( msg ):
sys.exit()
def __main__():
# TODO: This tool currently only works for Standard Fastq or Solexa Fastq where the
# This tool currently only works for Standard Fastq or Solexa Fastq where the
# quality scores are integers. This tool will not produce the correct result if the
# input format is fastqsolexa and the data includes quality scores that are ASCII.. Our
# fastqsolexa sniffer currently will not sniff data as fastqsolexa when the scores are ASCII,
# but a user can manually change the data type in whcih case this tool will break.
# but a user can manually change the data type in whcih case this tool will result in a job error.
infile_name = sys.argv[1]
outfile_seq = open( sys.argv[2], 'w' )
outfile_score = open( sys.argv[3], 'w' )