mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-11-01 11:14:34 +08:00
Update Python dependencies
by running `make update-dependencies`.
This commit is contained in:
galaxybot
committed by
github-actions[bot]
github-actions[bot]
parent
3b215326eb
commit
060f48e1d9
@@ -19,7 +19,7 @@ build==1.3.0
|
||||
cachecontrol==0.14.3
|
||||
cattrs==25.2.0
|
||||
certifi==2025.8.3
|
||||
cffi==1.17.1
|
||||
cffi==2.0.0 ; (implementation_name != 'pypy' and os_name == 'nt') or platform_python_implementation != 'PyPy'
|
||||
charset-normalizer==3.4.3
|
||||
click==8.1.8 ; python_full_version < '3.10'
|
||||
click==8.2.1 ; python_full_version >= '3.10'
|
||||
@@ -38,7 +38,7 @@ darkgraylib==2.4.0
|
||||
decorator==5.2.1
|
||||
defusedxml==0.7.1
|
||||
docutils==0.21.2
|
||||
dogpile-cache==1.4.0
|
||||
dogpile-cache==1.4.1
|
||||
enum-tools==0.12.0 ; python_full_version >= '3.10'
|
||||
exceptiongroup==1.3.0 ; python_full_version < '3.11'
|
||||
filelock==3.19.1
|
||||
@@ -70,12 +70,12 @@ jmespath==1.0.1
|
||||
jsonpatch==1.33
|
||||
jsonpointer==3.0.0
|
||||
jsonschema==4.25.1
|
||||
jsonschema-specifications==2025.4.1
|
||||
jsonschema-specifications==2025.9.1
|
||||
junit-xml==1.9
|
||||
keyring==25.6.0 ; platform_machine != 'ppc64le' and platform_machine != 's390x'
|
||||
kiwisolver==1.4.7 ; python_full_version < '3.10'
|
||||
kiwisolver==1.4.9 ; python_full_version >= '3.10'
|
||||
lxml==5.4.0
|
||||
lxml==6.0.1
|
||||
markdown-it-py==3.0.0
|
||||
markdown-it-reporter==0.0.2
|
||||
markupsafe==3.0.2
|
||||
@@ -95,7 +95,7 @@ myst-parser==4.0.1 ; python_full_version >= '3.10'
|
||||
nh3==0.3.0
|
||||
numpy==2.0.2 ; python_full_version < '3.10'
|
||||
numpy==2.2.6 ; python_full_version == '3.10.*'
|
||||
numpy==2.3.2 ; python_full_version >= '3.11'
|
||||
numpy==2.3.3 ; python_full_version >= '3.11'
|
||||
onedatafilerestclient==21.2.5.2
|
||||
outcome==1.3.0.post0
|
||||
owlrl==6.0.2 ; python_full_version < '3.10'
|
||||
@@ -114,13 +114,13 @@ prettytable==3.16.0
|
||||
prompt-toolkit==3.0.52
|
||||
propcache==0.3.2
|
||||
psutil==7.0.0 ; sys_platform != 'cygwin'
|
||||
psycopg==3.2.9
|
||||
pycparser==2.22
|
||||
psycopg==3.2.10
|
||||
pycparser==2.23 ; (implementation_name != 'PyPy' and implementation_name != 'pypy' and os_name == 'nt') or (implementation_name != 'PyPy' and platform_python_implementation != 'PyPy')
|
||||
pyee==13.0.0
|
||||
pygithub==2.8.1
|
||||
pygments==2.19.2
|
||||
pyjwt==2.10.1
|
||||
pynacl==1.5.0
|
||||
pynacl==1.6.0
|
||||
pyparsing==3.2.3
|
||||
pyproject-hooks==1.2.0
|
||||
pyshacl==0.26.0 ; python_full_version < '3.10'
|
||||
@@ -129,13 +129,13 @@ pysocks==1.7.1
|
||||
pytest==7.4.4
|
||||
pytest-asyncio==0.23.8
|
||||
pytest-base-url==2.1.0
|
||||
pytest-cov==6.2.1
|
||||
pytest-cov==7.0.0
|
||||
pytest-html==4.1.1
|
||||
pytest-httpserver==1.1.3
|
||||
pytest-json-report==1.5.0
|
||||
pytest-metadata==3.1.1
|
||||
pytest-mock==3.15.0
|
||||
pytest-playwright==0.7.0
|
||||
pytest-playwright==0.7.1
|
||||
pytest-postgresql==7.0.2
|
||||
pytest-shard==0.1.2
|
||||
python-dateutil==2.9.0.post0
|
||||
@@ -165,9 +165,11 @@ s3transfer==0.13.1
|
||||
schema-salad==8.9.20250723145140
|
||||
scipy==1.13.1 ; python_full_version < '3.10'
|
||||
scipy==1.15.3 ; python_full_version == '3.10.*'
|
||||
scipy==1.16.1 ; python_full_version >= '3.11'
|
||||
secretstorage==3.3.3 ; platform_machine != 'ppc64le' and platform_machine != 's390x' and sys_platform == 'linux'
|
||||
selenium==4.32.0
|
||||
scipy==1.16.2 ; python_full_version >= '3.11'
|
||||
secretstorage==3.3.3 ; python_full_version < '3.10' and platform_machine != 'ppc64le' and platform_machine != 's390x' and sys_platform == 'linux'
|
||||
secretstorage==3.4.0 ; python_full_version >= '3.10' and platform_machine != 'ppc64le' and platform_machine != 's390x' and sys_platform == 'linux'
|
||||
selenium==4.32.0 ; python_full_version < '3.10'
|
||||
selenium==4.35.0 ; python_full_version >= '3.10'
|
||||
seletools==1.5.0
|
||||
six==1.17.0
|
||||
sniffio==1.3.1
|
||||
@@ -196,9 +198,9 @@ tomli==2.2.1 ; python_full_version <= '3.11'
|
||||
trio==0.30.0
|
||||
trio-websocket==0.12.2
|
||||
tuspy==1.1.0
|
||||
twill==3.3
|
||||
twill==3.3.1
|
||||
twine==6.2.0
|
||||
typing-extensions==4.15.0
|
||||
typing-extensions==4.14.1
|
||||
tzdata==2025.2 ; sys_platform == 'win32'
|
||||
url-normalize==2.2.1
|
||||
urllib3==1.26.20 ; python_full_version < '3.10'
|
||||
|
||||
@@ -4,4 +4,4 @@ flake8-bugbear==24.12.12
|
||||
mccabe==0.7.0
|
||||
pycodestyle==2.14.0
|
||||
pyflakes==3.4.0
|
||||
ruff==0.12.12
|
||||
ruff==0.13.0
|
||||
|
||||
@@ -12,7 +12,7 @@ alembic==1.16.5
|
||||
amqp==5.3.1
|
||||
annotated-types==0.7.0
|
||||
anyio==4.10.0
|
||||
apispec==6.8.2
|
||||
apispec==6.8.3
|
||||
appdirs==1.4.4
|
||||
arcp==0.2.1
|
||||
argcomplete==3.6.2
|
||||
@@ -36,7 +36,7 @@ cachecontrol==0.14.3
|
||||
cachetools==5.5.2
|
||||
celery==5.5.3
|
||||
certifi==2025.8.3
|
||||
cffi==1.17.1
|
||||
cffi==2.0.0 ; implementation_name == 'pypy' or platform_python_implementation != 'PyPy'
|
||||
charset-normalizer==3.4.3
|
||||
circus==0.19.0
|
||||
click==8.1.8 ; python_full_version < '3.10'
|
||||
@@ -52,13 +52,14 @@ conda-package-streaming==0.12.0
|
||||
cryptography==45.0.7
|
||||
ct3==3.4.0
|
||||
cwl-upgrader==1.2.12
|
||||
cwl-utils==0.39
|
||||
cwl-utils==0.40
|
||||
cwltool==3.1.20250715140722
|
||||
defusedxml==0.7.1
|
||||
deprecated==1.2.18
|
||||
deprecation==2.1.0
|
||||
dictobj==0.4
|
||||
dnspython==2.7.0
|
||||
dnspython==2.7.0 ; python_full_version < '3.10'
|
||||
dnspython==2.8.0 ; python_full_version >= '3.10'
|
||||
docopt==0.6.2
|
||||
docutils==0.21.2
|
||||
dparse==0.6.4
|
||||
@@ -94,25 +95,25 @@ importlib-metadata==8.7.0 ; python_full_version < '3.10'
|
||||
importlib-resources==6.5.2 ; python_full_version < '3.12'
|
||||
invoke==2.2.0
|
||||
isa-rwval==0.10.11
|
||||
isal==1.7.2
|
||||
isal==1.8.0
|
||||
isodate==0.7.2 ; python_full_version < '3.11'
|
||||
jinja2==3.1.6
|
||||
jmespath==1.0.1
|
||||
jsonref==1.1.0
|
||||
jsonschema==4.25.1
|
||||
jsonschema-specifications==2025.4.1
|
||||
jsonschema-specifications==2025.9.1
|
||||
kombu==5.5.4
|
||||
lagom==2.7.7
|
||||
legacy-cgi==2.6.3 ; python_full_version >= '3.13'
|
||||
limits==4.2 ; python_full_version < '3.10'
|
||||
limits==5.5.0 ; python_full_version >= '3.10'
|
||||
lxml==5.4.0
|
||||
lxml==6.0.1
|
||||
mako==1.3.10
|
||||
markdown==3.9
|
||||
markdown-it-py==3.0.0
|
||||
markupsafe==3.0.2
|
||||
mdurl==0.1.2
|
||||
mercurial==7.1
|
||||
mercurial==7.1.1
|
||||
mistune==3.0.2
|
||||
mrcfile==1.5.4
|
||||
msal==1.33.0
|
||||
@@ -125,7 +126,7 @@ networkx==3.5 ; python_full_version >= '3.11'
|
||||
nodeenv==1.9.1
|
||||
numpy==2.0.2 ; python_full_version < '3.10'
|
||||
numpy==2.2.6 ; python_full_version == '3.10.*'
|
||||
numpy==2.3.2 ; python_full_version >= '3.11'
|
||||
numpy==2.3.3 ; python_full_version >= '3.11'
|
||||
oauthlib==3.3.1
|
||||
openpyxl==3.1.5
|
||||
orjson==3.11.3
|
||||
@@ -141,15 +142,15 @@ pillow==11.3.0
|
||||
prompt-toolkit==3.0.52
|
||||
propcache==0.3.2
|
||||
proto-plus==1.26.1
|
||||
protobuf==6.32.0
|
||||
protobuf==6.32.1
|
||||
prov==1.5.1
|
||||
psutil==7.0.0
|
||||
pulsar-galaxy-lib==0.15.10
|
||||
pyasn1==0.6.1
|
||||
pyasn1-modules==0.4.2
|
||||
pycparser==2.22
|
||||
pycparser==2.23 ; (implementation_name != 'PyPy' and platform_python_implementation != 'PyPy') or (implementation_name == 'pypy' and platform_python_implementation == 'PyPy')
|
||||
pycryptodome==3.23.0
|
||||
pydantic==2.11.7
|
||||
pydantic==2.11.8
|
||||
pydantic-core==2.33.2
|
||||
pydantic-tes==0.2.0
|
||||
pydot==4.0.1
|
||||
@@ -159,7 +160,7 @@ pygments==2.19.2
|
||||
pyjwt==2.10.1
|
||||
pykwalify==1.8.0
|
||||
pylibmagic==0.5.0
|
||||
pynacl==1.5.0
|
||||
pynacl==1.6.0
|
||||
pyparsing==3.2.3
|
||||
pypng==0.20220715.0
|
||||
pyreadline3==3.5.4 ; sys_platform == 'win32'
|
||||
@@ -171,7 +172,7 @@ python-slugify==8.0.4
|
||||
python3-openid==3.2.0
|
||||
pytz==2025.2
|
||||
pyyaml==6.0.2
|
||||
pyzmq==27.0.2
|
||||
pyzmq==27.1.0
|
||||
rdflib==7.1.4
|
||||
referencing==0.36.2
|
||||
refgenconf==0.12.2
|
||||
@@ -209,14 +210,14 @@ tenacity==9.1.2
|
||||
text-unidecode==1.3
|
||||
tifffile==2024.8.30 ; python_full_version < '3.10'
|
||||
tifffile==2025.5.10 ; python_full_version == '3.10.*'
|
||||
tifffile==2025.8.28 ; python_full_version >= '3.11'
|
||||
tifffile==2025.9.9 ; python_full_version >= '3.11'
|
||||
tinydb==4.8.2
|
||||
tomli==2.2.1 ; python_full_version < '3.11'
|
||||
tornado==6.5.2
|
||||
tqdm==4.67.1
|
||||
tuspy==1.1.0
|
||||
tuswsgi==0.5.5
|
||||
typing-extensions==4.15.0
|
||||
typing-extensions==4.14.1
|
||||
typing-inspection==0.4.1
|
||||
tzdata==2025.2
|
||||
tzlocal==5.3.1
|
||||
|
||||
@@ -13,7 +13,7 @@ botocore==1.40.18
|
||||
cachecontrol==0.14.3
|
||||
cattrs==25.2.0
|
||||
certifi==2025.8.3
|
||||
cffi==1.17.1 ; implementation_name != 'pypy' and os_name == 'nt'
|
||||
cffi==2.0.0 ; implementation_name != 'pypy' and os_name == 'nt'
|
||||
charset-normalizer==3.4.3
|
||||
click==8.1.8 ; python_full_version < '3.10'
|
||||
click==8.2.1 ; python_full_version >= '3.10'
|
||||
@@ -27,7 +27,7 @@ cwltest==2.6.20250818005349
|
||||
cycler==0.12.1
|
||||
decorator==5.2.1
|
||||
defusedxml==0.7.1
|
||||
dogpile-cache==1.4.0
|
||||
dogpile-cache==1.4.1
|
||||
enum-tools==0.12.0 ; python_full_version >= '3.10'
|
||||
exceptiongroup==1.3.0 ; python_full_version < '3.11'
|
||||
filelock==3.19.1
|
||||
@@ -51,11 +51,11 @@ jmespath==1.0.1
|
||||
jsonpatch==1.33
|
||||
jsonpointer==3.0.0
|
||||
jsonschema==4.25.1
|
||||
jsonschema-specifications==2025.4.1
|
||||
jsonschema-specifications==2025.9.1
|
||||
junit-xml==1.9
|
||||
kiwisolver==1.4.7 ; python_full_version < '3.10'
|
||||
kiwisolver==1.4.9 ; python_full_version >= '3.10'
|
||||
lxml==5.4.0
|
||||
lxml==6.0.1
|
||||
markdown-it-py==3.0.0
|
||||
markupsafe==3.0.2
|
||||
matplotlib==3.9.4 ; python_full_version < '3.10'
|
||||
@@ -68,7 +68,7 @@ multidict==6.6.4
|
||||
mypy-extensions==1.1.0
|
||||
numpy==2.0.2 ; python_full_version < '3.10'
|
||||
numpy==2.2.6 ; python_full_version == '3.10.*'
|
||||
numpy==2.3.2 ; python_full_version >= '3.11'
|
||||
numpy==2.3.3 ; python_full_version >= '3.11'
|
||||
onedatafilerestclient==21.2.5.2
|
||||
outcome==1.3.0.post0
|
||||
owlrl==6.0.2 ; python_full_version < '3.10'
|
||||
@@ -86,8 +86,8 @@ prettytable==3.16.0
|
||||
prompt-toolkit==3.0.52
|
||||
propcache==0.3.2
|
||||
psutil==7.0.0 ; sys_platform != 'cygwin'
|
||||
psycopg==3.2.9
|
||||
pycparser==2.22 ; implementation_name != 'pypy' and os_name == 'nt'
|
||||
psycopg==3.2.10
|
||||
pycparser==2.23 ; implementation_name != 'PyPy' and implementation_name != 'pypy' and os_name == 'nt'
|
||||
pyee==13.0.0
|
||||
pygments==2.19.2
|
||||
pyparsing==3.2.3
|
||||
@@ -97,13 +97,13 @@ pysocks==1.7.1
|
||||
pytest==7.4.4
|
||||
pytest-asyncio==0.23.8
|
||||
pytest-base-url==2.1.0
|
||||
pytest-cov==6.2.1
|
||||
pytest-cov==7.0.0
|
||||
pytest-html==4.1.1
|
||||
pytest-httpserver==1.1.3
|
||||
pytest-json-report==1.5.0
|
||||
pytest-metadata==3.1.1
|
||||
pytest-mock==3.15.0
|
||||
pytest-playwright==0.7.0
|
||||
pytest-playwright==0.7.1
|
||||
pytest-postgresql==7.0.2
|
||||
pytest-shard==0.1.2
|
||||
python-dateutil==2.9.0.post0
|
||||
@@ -128,8 +128,9 @@ s3transfer==0.13.1
|
||||
schema-salad==8.9.20250723145140
|
||||
scipy==1.13.1 ; python_full_version < '3.10'
|
||||
scipy==1.15.3 ; python_full_version == '3.10.*'
|
||||
scipy==1.16.1 ; python_full_version >= '3.11'
|
||||
selenium==4.32.0
|
||||
scipy==1.16.2 ; python_full_version >= '3.11'
|
||||
selenium==4.32.0 ; python_full_version < '3.10'
|
||||
selenium==4.35.0 ; python_full_version >= '3.10'
|
||||
seletools==1.5.0
|
||||
six==1.17.0
|
||||
sniffio==1.3.1
|
||||
@@ -146,8 +147,8 @@ tomli==2.2.1 ; python_full_version <= '3.11'
|
||||
trio==0.30.0
|
||||
trio-websocket==0.12.2
|
||||
tuspy==1.1.0
|
||||
twill==3.3
|
||||
typing-extensions==4.15.0
|
||||
twill==3.3.1
|
||||
typing-extensions==4.14.1
|
||||
tzdata==2025.2 ; sys_platform == 'win32'
|
||||
url-normalize==2.2.1
|
||||
urllib3==1.26.20 ; python_full_version < '3.10'
|
||||
|
||||
@@ -1,17 +1,17 @@
|
||||
# This file was autogenerated by uv via the following command:
|
||||
# uv export --frozen --no-annotate --no-hashes --only-group=typecheck
|
||||
annotated-types==0.7.0
|
||||
boto3-stubs==1.40.25
|
||||
botocore-stubs==1.40.25
|
||||
cffi==1.17.1 ; platform_python_implementation != 'PyPy'
|
||||
boto3-stubs==1.40.30
|
||||
botocore-stubs==1.40.30
|
||||
cffi==2.0.0 ; platform_python_implementation != 'PyPy'
|
||||
cryptography==45.0.7
|
||||
lxml-stubs==0.5.1
|
||||
mypy==1.17.1
|
||||
mypy-boto3-s3==1.40.0
|
||||
mypy==1.18.1
|
||||
mypy-boto3-s3==1.40.26
|
||||
mypy-extensions==1.1.0
|
||||
pathspec==0.12.1
|
||||
pycparser==2.22 ; platform_python_implementation != 'PyPy'
|
||||
pydantic==2.11.7
|
||||
pycparser==2.23 ; implementation_name != 'PyPy' and platform_python_implementation != 'PyPy'
|
||||
pydantic==2.11.8
|
||||
pydantic-core==2.33.2
|
||||
tomli==2.2.1 ; python_full_version < '3.11'
|
||||
types-awscrt==0.27.6
|
||||
@@ -27,11 +27,11 @@ types-python-dateutil==2.9.0.20250822
|
||||
types-python-slugify==8.0.2.20240310
|
||||
types-pyyaml==6.0.12.20250822
|
||||
types-requests==2.31.0.6 ; python_full_version < '3.10'
|
||||
types-requests==2.32.4.20250809 ; python_full_version >= '3.10'
|
||||
types-requests==2.32.4.20250913 ; python_full_version >= '3.10'
|
||||
types-s3transfer==0.13.1
|
||||
types-setuptools==80.9.0.20250822
|
||||
types-six==1.17.0.20250515
|
||||
types-urllib3==1.26.25.14 ; python_full_version < '3.10'
|
||||
typing-extensions==4.15.0
|
||||
typing-extensions==4.14.1
|
||||
typing-inspection==0.4.1
|
||||
urllib3==2.5.0 ; python_full_version >= '3.10'
|
||||
|
||||
Reference in New Issue
Block a user